View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9832_low_9 (Length: 347)
Name: NF9832_low_9
Description: NF9832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9832_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 60 - 333
Target Start/End: Original strand, 49150473 - 49150746
Alignment:
| Q |
60 |
cacaattgagagcgattgaaaatctaattgatcctaactatgcatgcatggcttgtaattagaatagcacgaaacctcaaggtatagattggattcaagg |
159 |
Q |
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| T |
49150473 |
cacaattgagagcgattgaaaatctaattgatcctaactatgcatgcatggcttgtaattagaatagcacgaaacctcaaagtatagattggattcaagg |
49150572 |
T |
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| Q |
160 |
tttcctcaaccatannnnnnngtcctattggaggaaacagcgcaagttcacattgatctttatcagctgtccagtctgttttttccacatgcctctgttt |
259 |
Q |
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| T |
49150573 |
tttcctcaaccatatttttttgtcctattggaagaaacagcgcaagttcacattgatctttatcagctgcccagtctgttttttccacatgcctctgttt |
49150672 |
T |
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| Q |
260 |
cattcaccctgttagaatccaattttcacgtttgattcaccggtttatatatttctcataagaatggttgaaag |
333 |
Q |
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| T |
49150673 |
cattcaccctgttagaatccaattttcacgtttgattcaccggtttatatatttcccataagaatggttgaaag |
49150746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 49150364 - 49150396
Alignment:
| Q |
28 |
aaaaaagcattggaaaccacttggtcgtggtgc |
60 |
Q |
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| T |
49150364 |
aaaaatgcattggaaaccacttggtcgtggtgc |
49150396 |
T |
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