View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_high_11 (Length: 316)
Name: NF9833_high_11
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 51705772 - 51705472
Alignment:
| Q |
1 |
catatacacacaaataaatatataataatcttctgaaatccaatcactactcttcaattgtttttagagaaagagaatgtcatacatttttcnnnnnnnc |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51705772 |
catatacatacaaataaatatataataatcttctgaaatccaatcactactcttcaattgtttttagagaaagagaatgtcatacatttttcaaaaaaac |
51705673 |
T |
|
| Q |
101 |
acttttgttataactcaattatgaaaactttagaacaaaattgggatgacaaaagagtgtgtgattttttctactagagaacatcactacatgcaccaaa |
200 |
Q |
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| T |
51705672 |
acttttgttataactcaattatgaaaactttagaacaaaattgggatgacaaaagagtgtgtgattttttctactagagaacatcactacatgcaccaaa |
51705573 |
T |
|
| Q |
201 |
gtagaaaatatataatgttacataagctagtactacattatacaagcatattgaaatcaaacgtatagttaccacaaatgctacattgacagcaacaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51705572 |
gtagaaaatatataatgttacataagctagtactacattatacaagcatattgaaatcaaacgtatagttaccacaaatgctacattgacagcaacaaag |
51705473 |
T |
|
| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
51705472 |
t |
51705472 |
T |
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