View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_high_13 (Length: 274)
Name: NF9833_high_13
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 656028 - 656291
Alignment:
| Q |
1 |
gttgtgtattctgacatccatgtaggagctcttcgagatctgcatgtaggcgagtttggttcgcttccacctgatgaagttgcggaggagtttcctcctg |
100 |
Q |
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| T |
656028 |
gttgtgtattctgacatccatgcaggagctcttcgagatctgcctgtaggcgagtttggttcgcttccacctgatgaagttgcggaggagtttcctcctg |
656127 |
T |
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| Q |
101 |
tttgcgagattgtgttacttgtattagaatcagagtcttcttctaactctaactctttgttggcatctgaatttttatcttcccagtccagcacatctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
656128 |
tttgcgagattgtgttacttgtattagaatcagagtcttcttctaactctaactctttgttggcatctgaatttttatcttcccagtccaacacatctga |
656227 |
T |
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| Q |
201 |
ttgcgcttctcctttactttgttcccatttccagcatgcattttcttcaaattttacatctctg |
264 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
656228 |
ttgtgcttctcctttgctttgttcccatttccagcatgcattttcttcaaattttacatctctg |
656291 |
T |
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