View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9833_high_18 (Length: 245)
Name: NF9833_high_18
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_high_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 2243197 - 2243095
Alignment:
| Q |
104 |
ttttgagcaaacatgaatagtctgcagagttatgaagcccagatactccaaaacagatatgtaaccatatcggattcgaatactcgcgaatacgtagcca |
203 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| | |||||||||||| ||||| || | ||| |||| ||||||||||||||||||| ||| |
|
|
| T |
2243197 |
ttttgagcaaacatgaagagtctatagagttatgaagctcgaatactccaaaacggatatatactcgtattggatatgaatactcgcgaatacgtaccca |
2243098 |
T |
|
| Q |
204 |
tga |
206 |
Q |
| |
|
||| |
|
|
| T |
2243097 |
tga |
2243095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 2243731 - 2243682
Alignment:
| Q |
61 |
gttgagtgagtttgagagaacgagaggaaagttgagaacggttttttgag |
110 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2243731 |
gttgaatgaggttgagagaacgagaggaaagttgagaacggttctttgag |
2243682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 41316278 - 41316250
Alignment:
| Q |
217 |
ttttaggcttaaatattgcactcgtccct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41316278 |
ttttaggcttaaatattgcactcgtccct |
41316250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 52331790 - 52331759
Alignment:
| Q |
214 |
ttattttaggcttaaatattgcactcgtccct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
52331790 |
ttattttaggcttaaatattgcactcgtccct |
52331759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 2439764 - 2439793
Alignment:
| Q |
216 |
attttaggcttaaatattgcactcgtccct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2439764 |
attttaggcttaaatattgcactcgtccct |
2439793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 3305999 - 3305971
Alignment:
| Q |
217 |
ttttaggcttaaatattgcactcgtccct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3305999 |
ttttaggcttaaatattgcactcgtccct |
3305971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University