View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9833_high_19 (Length: 242)
Name: NF9833_high_19
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 32377285 - 32377072
Alignment:
| Q |
14 |
aaaaaatgcataattaatgccaaaatannnnnnnngacaaataattaatgccaaaataaaagtgcatactattacatatttaagcctaatctaaacattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377285 |
aaaaaatgcataattaatgccaaaatattttttttgacaaatagttaatgccaaaataaaagtgcatactattacatatttaagcctaatctaaacattt |
32377186 |
T |
|
| Q |
114 |
gccgcaaaaattatgatgtatctcttctcttcacctcatccaaggaagtactacaaaaaagaaagtagaaaacataatagttttagtccccttaatcggt |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32377185 |
gccgcaaaaattatgatggatctcttctcttcacctcatacaaggaagtactacaaaaaagaaagtagaaaacataatagttttagtccccttaatcggt |
32377086 |
T |
|
| Q |
214 |
gggacccactttgt |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32377085 |
gggacccactttgt |
32377072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University