View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9833_low_1 (Length: 726)
Name: NF9833_low_1
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 148 - 711
Target Start/End: Original strand, 26613417 - 26613966
Alignment:
| Q |
148 |
tagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccacttagtatcatatgctatgatttaatatatatgcatatttgtggtgtgaca |
247 |
Q |
| |
|
||||| ||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26613417 |
tagtatgtctacaggctgtcattgttttctcctcataaatgaatccccacttagtatcatatgcaatgatttaatatatatgcatatttgtggtttgaca |
26613516 |
T |
|
| Q |
248 |
cataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactttagcatccttctctcatccatccctataaattgcaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26613517 |
cataaatcaatcaatctcaaccgtctatgttaaatctctagaacaaactaatgacaccaaactttagcatccttctctcatccatccctataaattgcaa |
26613616 |
T |
|
| Q |
348 |
ccttccatgccatgcaaatatcagtggttagtggtaactcaacaaagtaccgttttctttacnnnnnnnnnnnnnntcatcaaaagatggattctatggt |
447 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||| |||| |||||||||| ||||||| |
|
|
| T |
26613617 |
ccttccatgccatgcaaaaatcagtggt-------aactcaacaa-gtaccattttctttacaaaaagtt------tcattaaaagatggacgctatggt |
26613702 |
T |
|
| Q |
448 |
tgaaatgcaaaacaagcccatagttgaaattctctacaaagcacttttgggccaaggaacaatggaaatggtagccaaattgctagcaagtgatcttgag |
547 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26613703 |
tgaaatgcaaaacaagtccatagttgaaattctctacaaagcacttttggggcaaggaacaatggaaatggtagccaaattgctagcaagtgatcttgag |
26613802 |
T |
|
| Q |
548 |
tattggttccatggtccaccacaatgtcaacacatgatgaaggtgttaacgggagaaacaaatcacaaaaaagggttcaaatttgagccaagaagtttca |
647 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26613803 |
tattggttccatggcccaccacaatgtcaacacatgatgaaggtgttaacaggagaaacaaatcacaaaaaagggttcaaatttgagccaagaagtgtca |
26613902 |
T |
|
| Q |
648 |
cttcaattggtgattgtgtggtaactgaggggtgggaaggacaagcttattgggttcatgtttg |
711 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26613903 |
cttcaattggtgattgtgtgataactgaggggtgggaaggacaagcttattgggttcatgtttg |
26613966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 221 - 711
Target Start/End: Original strand, 26628465 - 26628941
Alignment:
| Q |
221 |
atatatatgcatatttgtggtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactttagcatcct |
320 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26628465 |
atatatatatatatgtgtggtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactaatgacaccaaactttagcatcct |
26628564 |
T |
|
| Q |
321 |
tctctcatccatccctataaattgcaaccttccatgccatgcaaatatcagtggttagtggtaactcaacaaagtaccgttttctttacnnnnnnnnnnn |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| |||| |
|
|
| T |
26628565 |
tctctcatccatccctataaattgcaaccttccatgccatgcaaaaatcagtggt-------aactcaacaa-gcaccgttttcattacaaaaaatt--- |
26628653 |
T |
|
| Q |
421 |
nnntcatcaaaagatggattctatggttgaaatgcaaaacaagcccatagttgaaattctctacaaagcacttttgggccaaggaacaatggaaatggta |
520 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26628654 |
---tcatcaaaagatggactctatggttgaaatgcaaaacaagtccatagtagaaattctctacaaagcacttttgggccaaggaacaatggaaatggtt |
26628750 |
T |
|
| Q |
521 |
gccaaattgctagcaagtgatcttgagtattggttccatggtccaccacaatgtcaacacatgatgaaggtgttaacgggagaaacaaatcacaaaaaag |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26628751 |
gccaaattgctagcaagtgatcttgagtattggttccatggtccaccaaaatgtcaacacatgatgaaggtgttaacaggagaaacaaatcacaaaaaag |
26628850 |
T |
|
| Q |
621 |
ggttcaaatttgagccaagaagtttcacttcaattggtgattgtgtggtaactgaggggtgggaaggacaagcttattgggttcatgtttg |
711 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26628851 |
ggttcaaatttgagccaagaagtgtcacctcaattggtgattgtgtgataactgaggggtgggaaggacaagcttattgggttcatgtttg |
26628941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 221 - 711
Target Start/End: Original strand, 26636956 - 26637426
Alignment:
| Q |
221 |
atatatatgcatatttgtggtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactttagcatcct |
320 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26636956 |
atatatatatatatttgtagtgtgacacataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactaatgacaccaaactttagcatcct |
26637055 |
T |
|
| Q |
321 |
tctctcatccatccctataaattgcaaccttccatgccatgcaaatatcagtggttagtggtaactcaacaaagtaccgttttctttacnnnnnnnnnnn |
420 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||| |||| |||||||||| |
|
|
| T |
26637056 |
tctctcatccatccctataaatcgcaacctcccatgccatgcaaaaatcagtggt-------aactcaacaa-gtactattttctttacaaaaagtt--- |
26637144 |
T |
|
| Q |
421 |
nnntcatcaaaagatggattctatggttgaaatgcaaaacaagcccatagttgaaattctctacaaagcacttttgggccaaggaacaatggaaatggta |
520 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
26637145 |
---tcatcaaaagatggactctatggttgaaaagcaaaataagtccatagttgaaattctctacaaagcacttttgggtcaaggaacaatg------gta |
26637235 |
T |
|
| Q |
521 |
gccaaattgctagcaagtgatcttgagtattggttccatggtccaccacaatgtcaacacatgatgaaggtgttaacgggagaaacaaatcacaaaaaag |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26637236 |
gccaaattgctagcaagtgatcttgagtattggttccatggtccaccaaaatgtcaacacatgatgaaggtgttaacaggagaaacaaatcacaaaaaag |
26637335 |
T |
|
| Q |
621 |
ggttcaaatttgagccaagaagtttcacttcaattggtgattgtgtggtaactgaggggtgggaaggacaagcttattgggttcatgtttg |
711 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26637336 |
ggttcaaatttgagccaagaagtgtcacctcaattggtgattgtgtgataactgaggggtgggaaggacaagcttattgggttcatgtttg |
26637426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 434 - 711
Target Start/End: Original strand, 26649213 - 26649490
Alignment:
| Q |
434 |
atggattctatggttgaaatgcaaaacaagcccatagttgaaattctctacaaagcacttttgggccaaggaacaatggaaatggtagccaaattgctag |
533 |
Q |
| |
|
||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26649213 |
atggactctatggtagaaatgcaaaacaagtccatagttgaaattctctacaaagcacttttgggccaaggaacaatggaaatggtagccaaattgctag |
26649312 |
T |
|
| Q |
534 |
caagtgatcttgagtattggttccatggtccaccacaatgtcaacacatgatgaaggtgttaacgggagaaacaaatcacaaaaaagggttcaaatttga |
633 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26649313 |
caagtgatcttgagtattggttccatggcccaccacaatgtcaacacatgatgaaggtgttaacaggagaaacagatcacaaaaaagggttcaaatttga |
26649412 |
T |
|
| Q |
634 |
gccaagaagtttcacttcaattggtgattgtgtggtaactgaggggtgggaaggacaagcttattgggttcatgtttg |
711 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
26649413 |
gccaagaagtgtgacttcaattggtgattgtgtgataactgaaggttgggaaggacaagcttattgggttcatgtttg |
26649490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 434 - 711
Target Start/End: Original strand, 26716655 - 26716932
Alignment:
| Q |
434 |
atggattctatggttgaaatgcaaaacaagcccatagttgaaattctctacaaagcacttttgggccaaggaacaatggaaatggtagccaaattgctag |
533 |
Q |
| |
|
||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26716655 |
atggactctatgatagaaatgcaaaacaagtccatagttgaaattctctacaaagcacttttgggtcaaggaacaatggaaatggtagccaaattgctag |
26716754 |
T |
|
| Q |
534 |
caagtgatcttgagtattggttccatggtccaccacaatgtcaacacatgatgaaggtgttaacgggagaaacaaatcacaaaaaagggttcaaatttga |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26716755 |
caagtgatcttgagtattggttccatggtccaccagaatgtcaacacatgatgaaggtgttaacaggagaaacaaatcacaaaaaagggttcaaatttga |
26716854 |
T |
|
| Q |
634 |
gccaagaagtttcacttcaattggtgattgtgtggtaactgaggggtgggaaggacaagcttattgggttcatgtttg |
711 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
26716855 |
gccaagaagtgtcacttcaattggtgattgtgtgataactgaaggttgggaaggacaagcttattgggttcatgtttg |
26716932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 26635853 - 26636080
Alignment:
| Q |
2 |
atgagatgtgaattttataaaccggttttatacgagttgagctcaacttaaccaaaattttaacgccacaactagtccaccacccacccacctccccggc |
101 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||| |||||||||| |||||||||||||| |||| |
|
|
| T |
26635853 |
atgagatatgaattttataaaccgattttatacgagttgagttaaacttaaccaaaattttaacaccaccactagtccacaacccacccacctccacggc |
26635952 |
T |
|
| Q |
102 |
tcaaccccacaaaaaagcagcctttt-ggctctaaaaatgcacatactagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccactta |
200 |
Q |
| |
|
|| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26635953 |
tccaccccacaaaaaagaagcctttttggctctaaaaatgcacatactagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccactta |
26636052 |
T |
|
| Q |
201 |
gtatcatatgctatgatttaatatatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
26636053 |
gtatcatatgctatgatttaatatatat |
26636080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 26628196 - 26628420
Alignment:
| Q |
5 |
agatgtgaattttataaaccggttttatacgagttgagctcaacttaaccaaaattttaacgccacaactagtccaccacccacccacctccccggctca |
104 |
Q |
| |
|
|||| ||||||||||||||| ||||||| || ||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| || |
|
|
| T |
26628196 |
agatatgaattttataaaccaattttataagaattgagttaaacttaaccaaaattttaacaccaccactagtccaccacccacccacctccacggttcc |
26628295 |
T |
|
| Q |
105 |
accccacaaaaaagcagccttttgg-ctctaaaaatgcacatactagtaagtccacaggctgtcatcgttttctcctcataaatgcattcccacttagta |
203 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26628296 |
accccacaaaaaagaagaattttttactctaaatatgcacatactagtaagtctacaggctgtcatcgttttctcctcataaatgcattcccccttagta |
26628395 |
T |
|
| Q |
204 |
tcatatgctatgatttaatatatat |
228 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26628396 |
tcatatgctatgatttaatatatat |
26628420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 26648946 - 26649023
Alignment:
| Q |
167 |
catcgttttctcctcataaatgcattcccacttagtatcatatgctatgatttaatatatatgcatatttgtggtgtgaca |
247 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26648946 |
catcgttttctccacataaatgcattcccacatagtaccatatgctatgatttaat---tatgcatatttgtggtgtgaca |
26649023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 26649064 - 26649127
Alignment:
| Q |
248 |
cataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
26649064 |
cataaatcaatcaatctcaaccgtctatgctcaatttccagaacaaactattgccaccaaactt |
26649127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 26716506 - 26716569
Alignment:
| Q |
248 |
cataaatcaatcaatctcaaccgtctatgctaaatttctagaacaaactattgacaccaaactt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
26716506 |
cataaatcaatcaatctcaaccgtctatgctcaatttccagaacaaactattgccaccaaactt |
26716569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 167 - 247
Target Start/End: Original strand, 26716388 - 26716465
Alignment:
| Q |
167 |
catcgttttctcctcataaatgcattcccacttagtatcatatgctatgatttaatatatatgcatatttgtggtgtgaca |
247 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26716388 |
catcgttttctccacataaatgcatccccacatagtaccatatgctatgatttaat---tatgcatatttgtggtgtgaca |
26716465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 26613287 - 26613364
Alignment:
| Q |
10 |
tgaattttataaaccggttttatacgagttgagctcaacttaaccaaaattttaacgccacaactagtccaccaccca |
87 |
Q |
| |
|
|||||||||||||||||||||| | |||||| | |||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
26613287 |
tgaattttataaaccggttttagaaatgttgagttaaacttaaccaaaattttaacaccaacactagtccaccaccca |
26613364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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