View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_11 (Length: 456)
Name: NF9833_low_11
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 6 - 441
Target Start/End: Original strand, 1423992 - 1424427
Alignment:
| Q |
6 |
agaagcaaaggatagcaccaattgtcgagaacagcacaagcagtagcaacagcaataacagttccaacagcattacactcttaagtggctacaatcacgt |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1423992 |
agaatcaaaagatagcaccaattgtcgagaacagcacaagcagtagcaacagcaataacagttccaacagcattacactcttaagtggctacaatcacgt |
1424091 |
T |
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| Q |
106 |
gaagttccctgtccgtgcacggagcaagtctcgtagtaagcctcaccttggcatttctgatacctggaaccatcaattcgcatggaaacaacctaataac |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1424092 |
aaagttccctgtccgtgcacggagcaagtctcgtagtaagcctcgccttggcatttctgatacctggaaccatcaattcgcgtggaaacaacctaataac |
1424191 |
T |
|
| Q |
206 |
aaaacttccaaagaacaagcgaaacaaacctcaaccattgggaggcaatgtcatcattgtggagctgataatactccgctatggcgtactggtcctggtg |
305 |
Q |
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| T |
1424192 |
aaaacttccaaagaacaagcgaaacaaacctcaaccattgggaggcaatgtcatcattgtggagctgataatactccgctatggcgtacaggtcctggtg |
1424291 |
T |
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| Q |
306 |
gtccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgt |
405 |
Q |
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| T |
1424292 |
gtccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgt |
1424391 |
T |
|
| Q |
406 |
gcattctaattcccacaggaaagtagtggaaataat |
441 |
Q |
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| T |
1424392 |
gcattctaattcccacaggaaagtagtggaaataat |
1424427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 139 - 440
Target Start/End: Original strand, 1424431 - 1424732
Alignment:
| Q |
139 |
tagtaagcctcaccttggcatttctgatacctggaaccatcaattcgcatggaaacaacctaataacaaaacttccaaagaacaagcgaaacaaacctca |
238 |
Q |
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| T |
1424431 |
tagtaagcctcaccttggcatttctgacacatggaaccgtcaattcacgtggaaacagccgagtaacaacacatccaaagaacaatcgaagaaaacctca |
1424530 |
T |
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| Q |
239 |
accattgggaggcaatgtcatcattgtggagctgataatactccgctatggcgtactggtcctggtggtccaaaaacactttgtaatgcatgtggggtta |
338 |
Q |
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| T |
1424531 |
accattgggaggaaatgtcatcattgtggagctgataatactccgcaatggcgtgtaggtccagatggtccaaaaacactttgtaatgcatgtggggtta |
1424630 |
T |
|
| Q |
339 |
ggtacaggtctggccgacttgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagtagtggaaat |
438 |
Q |
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| T |
1424631 |
ggtataggtctggccgacttgtacctgaataccgccctgcaaatagcccaactttttgcagcaacgtgcattctaattcccacagaaaagtagtggaaat |
1424730 |
T |
|
| Q |
439 |
aa |
440 |
Q |
| |
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|| |
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| T |
1424731 |
aa |
1424732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 435
Target Start/End: Complemental strand, 17602046 - 17601641
Alignment:
| Q |
30 |
tcgagaacagcacaagcagtagcaacagcaataacagttccaacagcattacactcttaagtggctacaatcacgtgaagttccctgtccgtgcacggag |
129 |
Q |
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| T |
17602046 |
tcgagaacagcacaagcagcagcaacagcaataacagttccaacagcattaccctcttaagtggctacaatcacatgaagttccctgtccgtgcacggag |
17601947 |
T |
|
| Q |
130 |
caagtctcgtagtaagcctcaccttggcatttctgatacctggaaccatcaattcgcatggaaacaacctaataacaaaacttccaaagaacaagcgaaa |
229 |
Q |
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|||||||||||| ||||||| ||||||| || ||||| ||| |||| |||||| ||||||||||||| | || ||||||||||||||| ||| |||| |
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| T |
17601946 |
caagtctcgtagcaagcctcgccttggccttgctgatgcctcaaacctgcaattcccatggaaacaaccgagtaccaaaacttccaaagagaaagtgaaa |
17601847 |
T |
|
| Q |
230 |
caaacctcaaccattgggaggcaatgtcatcattgtggagctgataatactccgctatggcgtactggtcctggtggtccaaaaacactttgtaatgcat |
329 |
Q |
| |
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|||||| ||||||| |||||| |||||||||||||||||| |||| ||||||| | ||||||| | ||||| ||| ||||| || ||||||||||||| |
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| T |
17601846 |
caaaccccaaccatcgggaggaaatgtcatcattgtggagttgatgatactccacaatggcgtgcaggtccaaatggcccaaagacgctttgtaatgcat |
17601747 |
T |
|
| Q |
330 |
gtggggttaggtacaggtctggccgacttgtacctgaataccgccctgcaaagagcccaactttttgcaacaatgtgcattctaattcccacaggaaagt |
429 |
Q |
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| T |
17601746 |
gtggggttaggtataagtctggccgacttgtacctgaataccgtcctgcaaatagcccaacttttcgcagtgacgtgcattctaattcccacaggaaagt |
17601647 |
T |
|
| Q |
430 |
agtgga |
435 |
Q |
| |
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|||||| |
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| T |
17601646 |
agtgga |
17601641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 42714549 - 42714619
Alignment:
| Q |
308 |
ccaaaaacactttgtaatgcatgtggggttaggtacaggtctggccgacttgtacctgaataccgccctgc |
378 |
Q |
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| T |
42714549 |
ccaaaaacactctgcaatgcttgcggtgttcggtacaagtctggccgacttttccctgaataccggcctgc |
42714619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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