View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_12 (Length: 455)

Name: NF9833_low_12
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_12
NF9833_low_12
[»] chr2 (8 HSPs)
chr2 (19-447)||(39459748-39460164)
chr2 (130-275)||(39157864-39158013)
chr2 (130-275)||(39481806-39481955)
chr2 (365-424)||(35198244-35198303)
chr2 (354-403)||(42043199-42043248)
chr2 (336-390)||(17292079-17292133)
chr2 (354-403)||(31980826-31980875)
chr2 (312-424)||(9956951-9957063)
[»] chr5 (3 HSPs)
chr5 (108-424)||(38461753-38462062)
chr5 (365-420)||(28322232-28322287)
chr5 (297-344)||(11109484-11109531)
[»] chr1 (3 HSPs)
chr1 (365-418)||(26462658-26462711)
chr1 (312-388)||(41837364-41837440)
chr1 (305-356)||(43609760-43609811)
[»] chr8 (5 HSPs)
chr8 (346-424)||(34259789-34259867)
chr8 (366-411)||(25799148-25799193)
chr8 (365-405)||(29096952-29096992)
chr8 (366-402)||(7007928-7007964)
chr8 (365-401)||(43806209-43806245)
[»] chr7 (5 HSPs)
chr7 (304-350)||(7643757-7643803)
chr7 (365-424)||(18750863-18750922)
chr7 (367-440)||(23948363-23948436)
chr7 (368-424)||(30737168-30737224)
chr7 (367-403)||(32855362-32855398)
[»] chr3 (7 HSPs)
chr3 (365-443)||(49636839-49636917)
chr3 (352-403)||(18268005-18268056)
chr3 (352-411)||(47542535-47542594)
chr3 (347-412)||(1502573-1502638)
chr3 (356-449)||(21768568-21768661)
chr3 (354-403)||(27858348-27858397)
chr3 (370-418)||(55053774-55053822)
[»] scaffold0024 (1 HSPs)
scaffold0024 (354-449)||(151104-151199)
[»] chr6 (3 HSPs)
chr6 (365-403)||(34625742-34625780)
chr6 (365-417)||(2468485-2468538)
chr6 (371-428)||(17422274-17422331)
[»] chr4 (3 HSPs)
chr4 (365-417)||(27131685-27131738)
chr4 (304-404)||(19262877-19262976)
chr4 (367-403)||(32369927-32369963)


Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 39460164 - 39459748
Alignment:
Q  19 gtgtaatgagtagctattgactgttactttgtaattgcatcattaatcaagaggtcaaaatgaacacatggggatttccagctgcagtggctcaaactca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39460164 gtgtaatgagtagctattgactgttactttgtaattgcatcattaatcaagaggtcaaaatgaacacatggggatttccagctgcagtggctcaaactca 39460065  T
Q  119 aactgatagtatgatcttccttcacattcctttaaatactttggacaattgagaagggcaaaacttgtataagattcttttccaacctaaaatagaagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39460064 aactgatagtatgatcttccttcacattcctttaaatactttggacaattgagaagggcaaaacttgtataagattcttttccaacctaaaatagaagaa 39459965  T
Q  219 atcatgtgtgtcaatcatcaatctacaacaatcccaacaaaatgagtaccaatgaaatgagtgacaacctctatactatagccctgacacttatgatcaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459964 atcatgtgtgtcaatcatcaatctacaacaatcccaacaaaatgagtaccaatgaaatgagtgacaacctctatactatagccctgacacttatgatcaa 39459865  T
Q  319 aggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 418  Q
    ||||||||| ||||||||||            | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39459864 aggcgtgtctggtgttcaac------------tgaacaccgacacgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 39459777  T
Q  419 tagtgtggtctccgatgtttgtgtctgtg 447  Q
    |||||||||||||||||||||||||||||    
T  39459776 tagtgtggtctccgatgtttgtgtctgtg 39459748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 39158013 - 39157864
Alignment:
Q  130 tgatcttccttcacattcctttaaatactttggacaattgagaagggcaaaacttgtataagattcttttccaacctaaaatagaagaaatc----atgt 225  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||     |||    
T  39158013 tgatcttccttcacactcctttaaatactttggacaattgagaagggcaaagattgtataagattcttttccaacctgaaatagaagaaatcgtggttgt 39157914  T
Q  226 gtgtcaatcatcaatctacaacaatcccaacaaaatgagtaccaatgaaa 275  Q
    |||||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  39157913 gtgtcaattatcaatctacaacagccccaacaaaattagtaccaatgaaa 39157864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 39481806 - 39481955
Alignment:
Q  130 tgatcttccttcacattcctttaaatactttggacaattgagaagggcaaaacttgtataagattcttttccaacctaaaatagaagaaatca----tgt 225  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    |||    
T  39481806 tgatcttccttcacattaatttaaatactttggacaattgagaagggcaaagattgtataagattcttttccaacctgaaatagaagaaatcatgggtgt 39481905  T
Q  226 gtgtcaatcatcaatctacaacaatcccaacaaaatgagtaccaatgaaa 275  Q
    ||||||||||||||||||||||   || |||||||| |||||||| ||||    
T  39481906 gtgtcaatcatcaatctacaaccgccctaacaaaattagtaccaaagaaa 39481955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 365 - 424
Target Start/End: Original strand, 35198244 - 35198303
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 424  Q
    |||||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||    
T  35198244 tgtgattacattcaattaattcattttcttaaattatgaccaatatcgatgtgttagtgt 35198303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 42043199 - 42043248
Alignment:
Q  354 acaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 403  Q
    |||||||||| ||| ||||||||||||||||||||||  |||||||||||    
T  42043199 acaccgacgcatgttattacattcaattaattcattttattaaattatta 42043248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 17292079 - 17292133
Alignment:
Q  336 aacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcattt 390  Q
    ||||||||||||||| || ||||||| | |||||| |||||||||||||| ||||    
T  17292079 aacatgtgtcggtgtacagcaccgacacatgtgatgacattcaattaatttattt 17292133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 31980875 - 31980826
Alignment:
Q  354 acaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 403  Q
    |||| ||| ||||||||||||||||||||| |||||| | ||||||||||    
T  31980875 acactgactcgtgtgattacattcaattaactcattttcgtaaattatta 31980826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 9956951 - 9957063
Alignment:
Q  312 tgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtc 411  Q
    ||||||||||| ||||||||||   |||||||||||||| |  ||| ||| | ||| ||||| ||||| ||||| ||||  | ||||||||||   | ||    
T  9956951 tgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactggtctc 9957050  T
Q  412 gacgtgttagtgt 424  Q
    |||||||||||||    
T  9957051 gacgtgttagtgt 9957063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 108 - 424
Target Start/End: Complemental strand, 38462062 - 38461753
Alignment:
Q  108 gctcaaactcaaactgatagtatgatcttccttcacattcctttaaatactttggacaattgagaagggcaaaacttgtataagattcttttccaaccta 207  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||| ||     
T  38462062 gctctaactcaaactgatggtatgatcttccttcacattcctttaaatactttggacaattgagaaggg-aaaagttgcattagattcttttccaatctg 38461964  T
Q  208 aaatagaagaaatcatgtgtgtcaatcatcaatctacaacaatcccaacaaaatgagtaccaatgaaatga-gtgacaacctctatactatagccctgac 306  Q
    ||||||||||||| ||| |       | |||||||||||||||| |||||||||||||||||||||||  |  |||| |||||||   |||||| | |||    
T  38461963 aaatagaagaaattatggg-------cgtcaatctacaacaatctcaacaaaatgagtaccaatgaaagaacatgacgacctcta---tatagcaccgac 38461874  T
Q  307 acttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgat--tacattcaattaattcatttccttaaattatta- 403  Q
    |||||||||| |||  |||||  |||||||||| |||||||||| |||||| ||| | || |||  ||  ||||||||||| |||||||||||||||||     
T  38461873 acttatgatcgaagatgtgtctagtgttcaacacgtgtcggtgtccaacactgacacatgagataatattttcaattaatttatttccttaaattattac 38461774  T
Q  404 ccaatgtcgacgtgttagtgt 424  Q
    ||||||||| |||||||||||    
T  38461773 ccaatgtcgtcgtgttagtgt 38461753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 28322287 - 28322232
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgtta 420  Q
    |||||||||||||||||||||||||| || ||||||| || | |||||||||||||    
T  28322287 tgtgattacattcaattaattcattttctcaaattatcactagtgtcgacgtgtta 28322232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 11109531 - 11109484
Alignment:
Q  297 tagccctgacacttatgatcaaaggcgtgtccggtgttcaacatgtgt 344  Q
    |||||||||||||| |||| |||||||| |||||||| ||||||||||    
T  11109531 tagccctgacacttttgatgaaaggcgtatccggtgtccaacatgtgt 11109484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 26462658 - 26462711
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 418  Q
    |||||||||||||||||| ||||||| |||||||||||| || |||||||||||    
T  26462658 tgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgt 26462711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 41837440 - 41837364
Alignment:
Q  312 tgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcat 388  Q
    ||||| |||| ||||||||||||  ||||||||  |||||  |||| ||| ||||| ||||||||||||||||||||    
T  41837440 tgatcgaaggtgtgtccggtgttagacatgtgtatgtgttagacacggactcgtgtcattacattcaattaattcat 41837364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 43609760 - 43609811
Alignment:
Q  305 acacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaaca 356  Q
    |||||| |||||||| |||||||| |||| |||||||||||||||| |||||    
T  43609760 acacttctgatcaaaagcgtgtccagtgtccaacatgtgtcggtgtccaaca 43609811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 34259789 - 34259867
Alignment:
Q  346 ggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 424  Q
    ||||| |||||||||| ||| |  ||| ||||||||| ||||||| || ||||||||||| ||||| ||||||||||||    
T  34259789 ggtgtccaacaccgacacgtctagttatattcaattatttcattttctcaaattattaccgatgtctacgtgttagtgt 34259867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 411
Target Start/End: Complemental strand, 25799193 - 25799148
Alignment:
Q  366 gtgattacattcaattaattcatttccttaaattattaccaatgtc 411  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||    
T  25799193 gtgatcacattcaattaattcattttctcaaattattaccaatgtc 25799148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 29096992 - 29096952
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattattacc 405  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  29096992 tgtgattacattcaattaatttattttcttaaattattacc 29096952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 7007928 - 7007964
Alignment:
Q  366 gtgattacattcaattaattcatttccttaaattatt 402  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  7007928 gtgattacattcaattaattcattttctttaattatt 7007964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 43806209 - 43806245
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattat 401  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  43806209 tgtgattatattcaattaattcattttcttaaattat 43806245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 7643803 - 7643757
Alignment:
Q  304 gacacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgt 350  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||    
T  7643803 gacacttatgatcaaaggcgtgtccggtgtccaacacgtttcggtgt 7643757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 424
Target Start/End: Complemental strand, 18750922 - 18750863
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 424  Q
    ||||||||||||||||||  |||||| ||||||||||||||  |||||| |||| |||||    
T  18750922 tgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgt 18750863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 23948436 - 23948363
Alignment:
Q  367 tgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgt 440  Q
    ||||||||||||||||||| ||||  | ||||||||| || ||||||| ||||||| | || |||| |||||||    
T  23948436 tgattacattcaattaattgattttttcaaattattatcagtgtcgacatgttagtcttgtgtccggtgtttgt 23948363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 30737168 - 30737224
Alignment:
Q  368 gattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgt 424  Q
    ||||||||||| |||  |||||| ||||||||||||| | |||||| ||||||||||    
T  30737168 gattacattcagttatgtcattttcttaaattattacaactgtcgatgtgttagtgt 30737224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 32855398 - 32855362
Alignment:
Q  367 tgattacattcaattaattcatttccttaaattatta 403  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  32855398 tgattacattcaattaaatcattttcttaaattatta 32855362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 443
Target Start/End: Original strand, 49636839 - 49636917
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtc 443  Q
    |||||||||||||||||||||||||| || ||||||||||||  |||||  ||| ||||| || || ||||| ||||||    
T  49636839 tgtgattacattcaattaattcattttctcaaattattaccagagtcgatctgtcagtgttgtgtctgatgtatgtgtc 49636917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 403
Target Start/End: Original strand, 18268005 - 18268056
Alignment:
Q  352 caacaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 403  Q
    |||||||||| | ||||||||| |||||||||||||||| || |||||||||    
T  18268005 caacaccgacacatgtgattacgttcaattaattcattttctcaaattatta 18268056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 47542594 - 47542535
Alignment:
Q  352 caacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtc 411  Q
    |||||||||| | ||||||||||||||| || ||||||| || |||||||||||| ||||    
T  47542594 caacaccgacacatgtgattacattcaaatagttcattttctcaaattattaccagtgtc 47542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 1502638 - 1502573
Alignment:
Q  347 gtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcg 412  Q
    |||| |||||| ||| | ||||||||||||||||||  |||||| |||| |||||||||| |||||    
T  1502638 gtgtccaacacagacacatgtgattacattcaattatgtcattttcttagattattaccagtgtcg 1502573  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 449
Target Start/End: Complemental strand, 21768661 - 21768568
Alignment:
Q  356 accgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtctgtgct 449  Q
    |||||| | |||| |||| ||||| |||||||||| || |||||||||||| | ||||||||| | ||| || |||| ||| |||||| |||||    
T  21768661 accgacacatgtggttacgttcaaataattcattttctcaaattattaccagtatcgacgtgtcaatgtcgtgtccggtgtatgtgtcagtgct 21768568  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 27858397 - 27858348
Alignment:
Q  354 acaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 403  Q
    |||||||||| ||||||||||||||||||  |||||| || |||||||||    
T  27858397 acaccgacgcctgtgattacattcaattaggtcattttctcaaattatta 27858348  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 55053822 - 55053774
Alignment:
Q  370 ttacattcaattaattcatttccttaaattattaccaatgtcgacgtgt 418  Q
    |||||||||  |||||||||| ||||||||||||||| | |||||||||    
T  55053822 ttacattcatataattcattttcttaaattattaccactctcgacgtgt 55053774  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 449
Target Start/End: Original strand, 151104 - 151199
Alignment:
Q  354 acaccgacgcgtgtgattacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtctccgatgtttgtgtctgtgct 449  Q
    ||||| |||| |||||||| ||||||||| || |||| ||||||||||||||  || || ||||||||||| || || | ||| |||||| |||||    
T  151104 acaccaacgcatgtgattatattcaattattttatttacttaaattattacccgtgccggcgtgttagtgttgtgtcaggtgtctgtgtcagtgct 151199  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 34625780 - 34625742
Alignment:
Q  365 tgtgattacattcaattaattcatttccttaaattatta 403  Q
    |||||||||||||||||||||||||| || |||||||||    
T  34625780 tgtgattacattcaattaattcattttctcaaattatta 34625742  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 2468485 - 2468538
Alignment:
Q  365 tgtgattacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 417  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  2468485 tgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 2468538  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 17422274 - 17422331
Alignment:
Q  371 tacattcaattaattcatttccttaaattattaccaatgtcgacgtgttagtgtggtc 428  Q
    ||||||||||||  |||||| || ||||||||| |  |||||||||||||||||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgtggtc 17422331  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 27131685 - 27131738
Alignment:
Q  365 tgtgattacattcaattaattc-atttccttaaattattaccaatgtcgacgtg 417  Q
    |||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||    
T  27131685 tgtggttacattcaattacttccattttcttaaattattaccaatgtctacgtg 27131738  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 404
Target Start/End: Original strand, 19262877 - 19262976
Alignment:
Q  304 gacacttatgatcaaaggcgtgtccggtgttcaacatgtgtcggtgttcaacaccgacgcgtgtgattacattcaattaattcatttccttaaattatta 403  Q
    ||||||| | || ||||| |||||| |||| | |||||||||||||| |||||  ||| | ||||||||||||||||||  |||| | || |||||||||    
T  19262877 gacacttctaataaaaggtgtgtccagtgtccgacatgtgtcggtgt-caacattgacacatgtgattacattcaattatgtcatcttctcaaattatta 19262975  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 32369927 - 32369963
Alignment:
Q  367 tgattacattcaattaattcatttccttaaattatta 403  Q
    |||||||||||||||||||||||| || |||||||||    
T  32369927 tgattacattcaattaattcattttctcaaattatta 32369963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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