View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_13 (Length: 455)
Name: NF9833_low_13
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 40391728 - 40392146
Alignment:
| Q |
1 |
cattcatgacattctaggattagcatctccgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaactta |
100 |
Q |
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| T |
40391728 |
cattcatgacattctaggattagcatctctgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaactta |
40391827 |
T |
|
| Q |
101 |
tacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgtgctcatagatttcgcgttctttggtttgatggtgacgacattgg |
200 |
Q |
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| T |
40391828 |
tacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatggcgacgacattgg |
40391927 |
T |
|
| Q |
201 |
atgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattggttggttgacttaaag-atgatagaacattattgatctaa |
299 |
Q |
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| T |
40391928 |
atgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataataatgaattggttggttgacctaaagcatgatagaacattattgatctaa |
40392027 |
T |
|
| Q |
300 |
ccttagtttttatcctcatttgaatactgtcttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatagaaccataagaaacttca |
399 |
Q |
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| T |
40392028 |
ccttagtttt-----tca------------cttcttttgttaag---tctggttaaacatttctgaagtgagaacttacatagaaccataagaaacttca |
40392107 |
T |
|
| Q |
400 |
atgtggttgttgattaacatgaactaagggataatgatg |
438 |
Q |
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| T |
40392108 |
atgtggttgttgattaacatgaattaagggataatgatg |
40392146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 40380387 - 40380772
Alignment:
| Q |
1 |
cattcatgacattctaggattagcatctccgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaactta |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40380387 |
cattcatgacattctaggattagcatctctgttcatgaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaactta |
40380486 |
T |
|
| Q |
101 |
tacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgtgctcatagatttcgcgttctttggtttgatggtgacgacattgg |
200 |
Q |
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| T |
40380487 |
tacaagtaacagttgcttttggggacatacaagaattagaacgaacattgtgacgggctcatagatttcgcgttctttggtttgatggtgacgacattgg |
40380586 |
T |
|
| Q |
201 |
atgcagctgtttctcgaaacaatgttgccaacaattgtgttgttacataatagtgaattggttggttga-cttaaagatgatagaacattattgatctaa |
299 |
Q |
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| T |
40380587 |
atgcagctgtttctcgaaacaatgttgctaataattgtgttgttacataatagtggattggttggttgatctcaagcatgatagaacattattgatctaa |
40380686 |
T |
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| Q |
300 |
------ccttagtttttatcctcatttgaatactgtcttcttttgttaagtcttctggttaaacatttctaaagtgagaacttaca |
379 |
Q |
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| T |
40380687 |
gactgtccttagtttttatcctcatttggatgctgtcttcttttgttaagtcttctggttgaacatttttaaagtgagaacttaca |
40380772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 299
Target Start/End: Complemental strand, 41054685 - 41054416
Alignment:
| Q |
37 |
gaacaacacaagactgctttggaatcacagatgaggatttaaaatcaagattgtgatgaacttatacaagtaacagttgcttttggggac--atacaaga |
134 |
Q |
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|||||||| ||||||||||||||||||||| ||| |||| || | ||||||||||||||||| || || ||| ||| ||||||| || | ||||| |
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| T |
41054685 |
gaacaacagaagactgctttggaatcacagttgattattttaagtgaagattgtgatgaacttggacgagggacaattg-ttttgggaacgcacacaagg |
41054587 |
T |
|
| Q |
135 |
attagaacgaacattgtgacgtgctcata-----gatttcgcgttctttggtttgatggtgacgacattggatgcagctgtttctcgaaacaatgttgcc |
229 |
Q |
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|||| || ||||||||||| | ||||| ||||| | | ||||||||||||||| || |||| ||||||||||| || ||| ||||||||||||| |
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| T |
41054586 |
attaaaatgaacattgtgatgatctcatcatattgattttgtgctctttggtttgatggcgatgacaatggatgcagcttttgctcaaaacaatgttgcc |
41054487 |
T |
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| Q |
230 |
aacaattgtgttgttacataatagtgaattggttggttgacttaaag-atgatagaacattattgatctaa |
299 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||| | ||| |||| |||||||||||||||||| |
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| T |
41054486 |
aataattgtgttgttacataatagtggattggttggttgacctgaagcatgagagaacattattgatctaa |
41054416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 404
Target Start/End: Complemental strand, 41052261 - 41052188
Alignment:
| Q |
331 |
ttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatagaaccataagaaacttcaatgtg |
404 |
Q |
| |
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|||||| |||||||||||||||| ||| ||||||||||||||| ||| | |||||| |||||||| |||||||| |
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| T |
41052261 |
ttctttggttaagtcttctggttgaacttttctaaagtgagaaattaaacagaaccttaagaaacatcaatgtg |
41052188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 54592821 - 54592909
Alignment:
| Q |
331 |
ttcttttgttaagtcttctggttaaacatttctaaagtgagaacttacatagaaccataagaaacttcaatgtggttgttgattaacatg |
420 |
Q |
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|||||| ||||||| ||| ||| |||||||||||| |||||||||| | |||||| ||||||||||||||||||| |||| |||||||| |
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| T |
54592821 |
ttctttggttaagttttcaggtggaacatttctaaactgagaacttaaa-agaaccttaagaaacttcaatgtggtagttgcttaacatg |
54592909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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