View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_14 (Length: 439)

Name: NF9833_low_14
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_14
NF9833_low_14
[»] chr2 (5 HSPs)
chr2 (10-424)||(9310658-9311075)
chr2 (10-363)||(15000393-15000743)
chr2 (10-263)||(4406583-4406834)
chr2 (292-390)||(26893352-26893451)
chr2 (292-390)||(26898791-26898890)
[»] chr7 (1 HSPs)
chr7 (10-390)||(44059661-44060037)
[»] chr6 (2 HSPs)
chr6 (11-391)||(9815163-9815548)
chr6 (292-371)||(8269009-8269087)
[»] chr4 (1 HSPs)
chr4 (10-276)||(4763012-4763276)
[»] chr3 (1 HSPs)
chr3 (10-263)||(6910842-6911093)
[»] chr1 (1 HSPs)
chr1 (197-257)||(26143006-26143066)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 424
Target Start/End: Original strand, 9310658 - 9311075
Alignment:
Q  10 gcacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactaga 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  9310658 gcacagaccactggtacatgaagtctggccagcctaaagaaccaaacttgacagatagcttttgaataaatagtacgctgtgaaacctaaacttactaga 9310757  T
Q  110 attttcgacagagtatcttttgtatctttaaaatttcaacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatctaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9310758 attttcgacagagtatcttttgtatctttaaaatttcaacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatctaa 9310857  T
Q  210 ggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatatacatatatgactcaag--nnnnnnnnnnnnnnncaaaagagtagatcat 307  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||                 ||||||||||||||||    
T  9310858 ggtttgtacattccaaaataaaagtattcctaaactcgaatagctgcagatacatatataactcaagatatatatatatatatacaaaagagtagatcat 9310957  T
Q  308 caaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacacagttgactgcaaatctgaag-nnnnnnntataagat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  9310958 caaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacacagttgactgcaaatctgaagaaaaaaaatataagat 9311057  T
Q  407 gatgggctaagtcataag 424  Q
    |||||| |||||||||||    
T  9311058 gatggggtaagtcataag 9311075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 15000393 - 15000743
Alignment:
Q  10 gcacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactaga 109  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||| ||||| | |||||||| ||||||||||||    
T  15000393 gcacagaccactgatacatgaagtttggccagcctaaagaaccgaacttgacaaatagcttttgaataaaaagtacaccgtgaaaccgaaacttactaga 15000492  T
Q  110 attttcgacagagtatcttttgtatctttaaaa-tttcaacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatcta 208  Q
    ||||| ||||||||||||| | ||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  15000493 atttttgacagagtatcttgtatatctttaacactttcaaaatcagaaccctgtttacaaacatatgccatcaagcagaatttgaaagactacatatcta 15000592  T
Q  209 aggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatatacatatatgactcaagnnnnnnnnnnnnnnncaaaagagtagatcatc 308  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||               |||||||||||||||||    
T  15000593 aggtttgtacattccaaaataaaagtattcctagactcgagtagctggagatacatatatgactcaag----atatacatatacaaaagagtagatcatc 15000688  T
Q  309 aaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaa 363  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15000689 aaggagcagaagcctacccaaagagtgacattgcaggatctttaatcttctagaa 15000743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 4406834 - 4406583
Alignment:
Q  10 gcacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactaga 109  Q
    |||||||| ||||||||||||||||||||||||||||  ||||| |||||||| ||| ||| | |||||||||||| || ||||||| |||||||||| |    
T  4406834 gcacagactactgatacatgaagtctggccagcctaacaaaccacacttgacaaatatcttgtgaataaatagtacactctgaaaccaaaacttactaca 4406735  T
Q  110 attttcgacagagtatcttttgtatctttaaaattt-caacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatcta 208  Q
    ||||  |||| ||||| |||  |||||| || |||| |||  | | |||| || ||||||||||||||||||||| |||||| || |||||||||||| |    
T  4406734 attt--gacaaagtatatttc-tatcttcaacattttcaaactaaaaaccttgcttacaaacatatgccatcaagcagaatttgagagactacatatcca 4406638  T
Q  209 aggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatataca 263  Q
    | ||||||| || ||||||||| ||||||||||||||| |||||||||| |||||    
T  4406637 aagtttgtatatcccaaaataatagtattcctagactcaaatagctgcagataca 4406583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 26893352 - 26893451
Alignment:
Q  292 caaaagagtagatcatcaaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacac--agttgactgcaaatctga 389  Q
    ||||||||||| ||||||| |||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  26893352 caaaagagtagttcatcaaagagaggaagcctacc-aaagagtgacattgctggatctttaatcttctagaaacttacactaagttgactgtaaatctga 26893450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 26898791 - 26898890
Alignment:
Q  292 caaaagagtagatcatcaaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacac--agttgactgcaaatctga 389  Q
    ||||||||||| ||||||| |||   ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  26898791 caaaagagtagttcatcaaagagaggaagcctacc-aaagagtgacattgctggatctttaatcttctagaaacttacactaagttgactgtaaatctga 26898889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 44059661 - 44060037
Alignment:
Q  10 gcacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactaga 109  Q
    |||||||| | |||||||| |||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||  ||||||||| ||| | ||||||    
T  44059661 gcacagactaatgatacataaagtctggccagcctaacaaaccaaacttgacaaatagcttttgaataaatagtacaatgtgaaaccaaaa-tcactaga 44059759  T
Q  110 attttcgacagagtatcttttgtatctttaaaattt-caacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatcta 208  Q
    | ||| |||||||||| ||||||||||| || |||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  44059760 aattttgacagagtatattttgtatcttcaacattttcaaaatcagaaccctgtttacaaacatatgccatcaagcagaatttgaaagactacatatcta 44059859  T
Q  209 aggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatatacatatatgactcaagnnnnnnnnnnnnnnncaaaagagtagatcatc 308  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||               ||||| |||||||||||    
T  44059860 aggtttgtacattccaaaataaaagtattcctagactcaaatagctgcagatacataaatgactcaag----atatacatatacaaaatagtagatcatc 44059955  T
Q  309 aaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacacagttgactgcaaatctgaa 390  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44059956 aaggagcagaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacacagttgactgcaaatctgaa 44060037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 391
Target Start/End: Complemental strand, 9815548 - 9815163
Alignment:
Q  11 cacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactagaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||    
T  9815548 cacagaccactgatacatgaagtctggccagcctaaagaagagaacttgacaaatagcttttgaataaatagtacactgtgaaaccgaaacttactagaa 9815449  T
Q  111 ttttcgacagagtatcttttgtatctttaa-aatttc-aacatcagaaccctg-------tttacaaacatatgccatcaagtagaattggaaagactac 201  Q
    |||| ||||||||||||| | ||||||||| | |||| || ||||||||||||       ||||||||||||||||| |||| |||||| ||| ||||||    
T  9815448 tttttgacagagtatcttatatatctttaacactttcaaaaatcagaaccctgtttacaatttacaaacatatgccaccaagcagaatttgaaggactac 9815349  T
Q  202 atatctaaggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatatacatatatgactcaagnnnnnnnnnnnnnnncaaaagagta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||               ||||||||||    
T  9815348 atatctaaggtttgtacattccaaaataaaagtattcctagactcgaatagctgcagatacacatatgactcaag----atatacatatacaaaagagta 9815253  T
Q  302 gatcatcaaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacacagttgactgcaaatctgaag 391  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9815252 gatcatcaaggagcagaagcctacctaaagagtgacattgcatgatctttaatcttctagaaacttacacagttgactgcaaatctgaag 9815163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 8269009 - 8269087
Alignment:
Q  292 caaaagagtagatcatcaaggagcaaaagcctacccaaagagtgacattgcaggatctttaatcttctagaaacttacac 371  Q
    ||||||||||| ||||||||||||  ||| |||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  8269009 caaaagagtagttcatcaaggagcggaagtctacccaa-gagtgacattgctggatctttaatattctagaaacttacac 8269087  T

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Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 4763012 - 4763276
Alignment:
Q  10 gcacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactaga 109  Q
    |||||||| |||||||||| |||||||||||||||||  ||||| |||||||| ||| ||| | |||||||||||| || ||||||| |||||||||| |    
T  4763012 gcacagactactgatacataaagtctggccagcctaacaaaccacacttgacaaatatcttgtgaataaatagtacactctgaaaccaaaacttactata 4763111  T
Q  110 attttcgacagagtatcttttgtatctttaaaattt-caacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatcta 208  Q
    ||||  |||| ||||| |||  |||||| || |||| |||  | | |||| || ||||||||||||||||||||| |||||| || |||||||||||| |    
T  4763112 attt--gacaaagtatatttc-tatcttcaacattttcaaattaaaaaccttgcttacaaacatatgccatcaagcagaatttgagagactacatatcca 4763208  T
Q  209 aggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatatacatatatgactcaag 276  Q
    | ||||||| || ||||||||| ||||||||||||||| |||||||||| |||||   ||||||||||    
T  4763209 aagtttgtatatcccaaaataatagtattcctagactcaaatagctgcagatacaccaatgactcaag 4763276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 6910842 - 6911093
Alignment:
Q  10 gcacagaccactgatacatgaagtctggccagcctaaagaaccaaacttgacatatagcttttaaataaatagtacgctgtgaaacctaaacttactaga 109  Q
    |||||||| |||||||||| || ||||||||||||||  ||||| |||||||| | | ||| | |||||||||||| || ||||||| |||||||||| |    
T  6910842 gcacagactactgatacataaaatctggccagcctaacaaaccacacttgacaaaaatcttgtgaataaatagtacactctgaaaccaaaacttactata 6910941  T
Q  110 attttcgacagagtatcttttgtatctttaaaattt-caacatcagaaccctgtttacaaacatatgccatcaagtagaattggaaagactacatatcta 208  Q
    ||||  | || ||||| |||  |||||| || |||| |||  | | |||| || |||||||||||||||||||||  ||||| || |||||||||||| |    
T  6910942 attt--ggcaaagtatatttc-tatcttcaacattttcaaattaaaaaccttgcttacaaacatatgccatcaagctgaatttgagagactacatatcca 6911038  T
Q  209 aggtttgtacattccaaaataaaagtattcctagactcgaatagctgcatataca 263  Q
    | ||||||| || ||||||||| ||||||||||||||| |||||||||| |||||    
T  6911039 aagtttgtatatcccaaaataatagtattcctagactcaaatagctgcagataca 6911093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 26143006 - 26143066
Alignment:
Q  197 actacatatctaaggtttgtacattccaaaataaaagtattcctagactcgaatagctgca 257  Q
    ||||| ||||||| |||||||||| |||||||||||| |||  ||||||| ||||||||||    
T  26143006 actacgtatctaaagtttgtacatcccaaaataaaagcatttttagactcaaatagctgca 26143066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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