View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_15 (Length: 422)
Name: NF9833_low_15
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 6 - 406
Target Start/End: Complemental strand, 41276428 - 41276028
Alignment:
| Q |
6 |
gtttcgtgtttaatagattattgtcaattagattcttgtctttgcttccatggttcattttcacaagtttccttcaacgaagccgaatgtatgggcctgc |
105 |
Q |
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| T |
41276428 |
gtttcgtgtttaatagattattgtcaattagattcttgtctttgcttccatggttcattttcacaagtttccttcaacgaagccgaatgtatgggcctgc |
41276329 |
T |
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| Q |
106 |
gggtggcatttcggcagtgattggggcagttttgatattgggccgaaaaaacataggcccaccaagcgagttcgccatagaaagaatcatcgaaactttt |
205 |
Q |
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| T |
41276328 |
gggtggcatttcggcagtgattggggcagttttgatattgggccgaaaaaacataggcccaccaagcgagttcgccatagaaagaatcatcgaaactttt |
41276229 |
T |
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| Q |
206 |
attgggctttcatgttctatttttgtggatcttcttttttggcccaaaagggcttcaacatgtgccaaatatgaactatcccaatgtttgttcacactag |
305 |
Q |
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| T |
41276228 |
attgggctttcatgttctatttttgtggatcttcttttttggcccaaaagggcttcaacatgtgccaaatatgaactctcccaatgtttgttcacactag |
41276129 |
T |
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| Q |
306 |
ttgaaacaattggaacattgagccttgttggcaaaactgattcacaattggaagaaaatcaaagaaaacttaaggcccaagttaatgagcttagaaaatt |
405 |
Q |
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| T |
41276128 |
ttgaaacaattggaacattgagcctagttggcaaaactgattcacaattggaagaaaatcaaagaaaacttaaggcccaagttaatgagcttagaaaatt |
41276029 |
T |
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| Q |
406 |
t |
406 |
Q |
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| T |
41276028 |
t |
41276028 |
T |
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