View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_16 (Length: 417)

Name: NF9833_low_16
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_16
NF9833_low_16
[»] chr4 (5 HSPs)
chr4 (17-217)||(35774410-35774610)
chr4 (275-405)||(35774674-35774804)
chr4 (66-131)||(21688089-21688154)
chr4 (80-113)||(28145293-28145326)
chr4 (75-131)||(24274897-24274953)
[»] chr8 (4 HSPs)
chr8 (63-131)||(40038390-40038458)
chr8 (157-204)||(27490247-27490294)
chr8 (157-215)||(16697830-16697888)
chr8 (63-124)||(27490344-27490405)
[»] chr7 (2 HSPs)
chr7 (65-128)||(8063093-8063156)
chr7 (157-202)||(8063208-8063253)
[»] chr5 (2 HSPs)
chr5 (64-130)||(33373391-33373457)
chr5 (65-131)||(31653219-31653286)
[»] chr2 (2 HSPs)
chr2 (157-215)||(4421783-4421841)
chr2 (87-131)||(32454800-32454844)
[»] chr6 (1 HSPs)
chr6 (82-131)||(2805340-2805389)
[»] scaffold0031 (1 HSPs)
scaffold0031 (75-131)||(106392-106448)
[»] chr1 (3 HSPs)
chr1 (63-131)||(35388693-35388761)
chr1 (155-213)||(35388588-35388646)
chr1 (157-213)||(9126895-9126951)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 35774410 - 35774610
Alignment:
Q  17 attttagttttgtaagaatttaacttttattttaaagagactgatatccctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaatt 116  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||     
T  35774410 attttaattttgtaagaatttaacttttattttaaagagaccgatatccctctttaatcatatgttggaaagaaatgttagcaatatgctcatttaaatc 35774509  T
Q  117 aaagatcttcaccaataaatttttggccaagctcggccaagtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatgtct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35774510 aaagatcttcaccaataaatttttggccaagctcggccaagtgtgacattttggcagactcctccttcgaagttggagtctgtgttgagacttgatgtct 35774609  T
Q  217 c 217  Q
    |    
T  35774610 c 35774610  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 275 - 405
Target Start/End: Original strand, 35774674 - 35774804
Alignment:
Q  275 gagaaggatatggaaaaaggttttcaaattattaattttttgctatagcttttcaaattggttaatattttggtacatcctagtttgaagatgtatcatg 374  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35774674 gagaaggatatggaaaaaggttttcaaatcattaattttttgctatagcttttcaaattggttaatattttggtacatcctagtttgaagatgtatcatg 35774773  T
Q  375 tgacatttatgacatggccctcatttatctc 405  Q
    |||||||||||||||||||||||||||||||    
T  35774774 tgacatttatgacatggccctcatttatctc 35774804  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 21688089 - 21688154
Alignment:
Q  66 ctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    |||| ||| |||| |||||||| |||||||||  |||||||||||||||  ||| |||||||||||    
T  21688089 ctctctaaacacatgttggaaataaatgttagggatatgctcctttaaaccaaaaatcttcaccaa 21688154  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 28145293 - 28145326
Alignment:
Q  80 gttggaaagaaatgttagcaatatgctcctttaa 113  Q
    |||||||||||||||||| |||||||||||||||    
T  28145293 gttggaaagaaatgttaggaatatgctcctttaa 28145326  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 24274897 - 24274953
Alignment:
Q  75 cacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    |||| |||||||||||||||||  |||||||||||||||   ||| |||||||||||    
T  24274897 cacatgttggaaagaaatgttacgaatatgctcctttaacccaaaaatcttcaccaa 24274953  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 40038390 - 40038458
Alignment:
Q  63 tccctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    ||||||| ||| |||| |||||||||||||||||  ||||| ||||||||||  |||||||||||||||    
T  40038390 tccctctctaagcacatgttggaaagaaatgttaagaatattctcctttaaaccaaagatcttcaccaa 40038458  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 27490294 - 27490247
Alignment:
Q  157 gtgtgacattttggcagactcctccttcaaagttggagtctgtgttga 204  Q
    ||||||||| ||||||||||||||||||| |||||||||| |||||||    
T  27490294 gtgtgacatattggcagactcctccttcagagttggagtcggtgttga 27490247  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 16697888 - 16697830
Alignment:
Q  157 gtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatgtc 215  Q
    ||||||| ||||||||| ||||||| ||| ||||| |||  ||||||||||||||||||    
T  16697888 gtgtgactttttggcaggctcctccgtcagagttgaagttagtgttgagacttgatgtc 16697830  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 27490344 - 27490405
Alignment:
Q  63 tccctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatct 124  Q
    ||||||| ||| |||| ||| |||||||||||||| ||||||||| ||||||  ||||||||    
T  27490344 tccctctctaagcacatgttagaaagaaatgttaggaatatgctcttttaaaccaaagatct 27490405  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 8063156 - 8063093
Alignment:
Q  65 cctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcac 128  Q
    ||||| ||| |||| |||||||||||||||||| ||||||||||||||||  ||| ||||||||    
T  8063156 cctctctaagcacatgttggaaagaaatgttaggaatatgctcctttaaaccaaaaatcttcac 8063093  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 8063208 - 8063253
Alignment:
Q  157 gtgtgacattttggcagactcctccttcaaagttggagtctgtgtt 202  Q
    ||||||||| ||| ||||||||||||||| |||||||||| |||||    
T  8063208 gtgtgacatattgacagactcctccttcagagttggagtcagtgtt 8063253  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 33373391 - 33373457
Alignment:
Q  64 ccctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcacca 130  Q
    |||||| ||| |||| |||||||||||||||||| |||||| |||||||||| ||| ||||| ||||    
T  33373391 ccctctctaagcacacgttggaaagaaatgttagaaatatgttcctttaaatgaaaaatcttaacca 33373457  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 31653219 - 31653286
Alignment:
Q  65 cctctttaatcacaagttggaaagaaatgttagca-atatgctcctttaaattaaagatcttcaccaa 131  Q
    ||||| ||| |||| |||||||||||||||||| | |||||||| |||||| |||| |||||||||||    
T  31653219 cctctctaagcacatgttggaaagaaatgttaggatatatgctcatttaaactaaaaatcttcaccaa 31653286  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 4421783 - 4421841
Alignment:
Q  157 gtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatgtc 215  Q
    ||||||| ||||||||||||||||| || ||||||||| | |||||||| |||||||||    
T  4421783 gtgtgaccttttggcagactcctccatcgaagttggaggcagtgttgaggcttgatgtc 4421841  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 32454800 - 32454844
Alignment:
Q  87 agaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    ||||||||||| ||||||||||||||||  |||||| ||||||||    
T  32454800 agaaatgttaggaatatgctcctttaaaccaaagattttcaccaa 32454844  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 2805389 - 2805340
Alignment:
Q  82 tggaaagaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    |||||||||||||||||||||| ||||||||||  ||| |||||||||||    
T  2805389 tggaaagaaatgttagcaatatactcctttaaaccaaaaatcttcaccaa 2805340  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 106448 - 106392
Alignment:
Q  75 cacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    |||| |||||||||||||||||  |||||||||||||||  |||| |||||||||||    
T  106448 cacatgttggaaagaaatgttacgaatatgctcctttaacctaaaaatcttcaccaa 106392  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 35388693 - 35388761
Alignment:
Q  63 tccctctttaatcacaagttggaaagaaatgttagcaatatgctcctttaaattaaagatcttcaccaa 131  Q
    ||||||| ||| |||| |||||||||||||||||| ||||| | | |||||| |||||||||| |||||    
T  35388693 tccctctctaaacacatgttggaaagaaatgttaggaatatacacttttaaactaaagatctttaccaa 35388761  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 35388646 - 35388588
Alignment:
Q  155 aagtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatg 213  Q
    ||||||||||||||| |||||| ||| |||| ||||| |||| |||||||| |||||||    
T  35388646 aagtgtgacattttgacagacttctcattcatagttgaagtcagtgttgaggcttgatg 35388588  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 9126951 - 9126895
Alignment:
Q  157 gtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatg 213  Q
    ||||| |||||| ||| |||||||||||||||| ||| || |||||||| |||||||    
T  9126951 gtgtggcattttagcaaactcctccttcaaagtgggaatcggtgttgaggcttgatg 9126895  T

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