View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_17 (Length: 411)
Name: NF9833_low_17
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 401
Target Start/End: Complemental strand, 36129016 - 36128627
Alignment:
| Q |
6 |
acttccaaattgacagagatcaaagacaaatacttcctcaactcattgatccttggactaatgatgaagttcttgcacttttgaagatcagatccagcat |
105 |
Q |
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| T |
36129016 |
acttccaaattgacagagatcaaagacaaatacttcctcaactcattgatccttggactaatgatgaagttcttgcacttttgaagatcagatccagcat |
36128917 |
T |
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| Q |
106 |
ggagagttggttcccagatttcacttgggaacatgtctcaaggtatacatacaaatatatcattgtaattctaacatctccttcacttcatccatttaat |
205 |
Q |
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| T |
36128916 |
ggagagttggttcccagatttcacttgggaacatgtctcaaggtatacatacaaatatatcattgtaattctaacatctccttcacttcatccatttaat |
36128817 |
T |
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| Q |
206 |
caagtcattaacaatcataccaataattaataaataaattcatatatgagctagatatttataaatcgtaactaatgtatattcttaatactagttttac |
305 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36128816 |
caagtcattaacaatcataccaataattaat----aaattcatatatgagctagatatttataaatcgtaactaatgtatattcttaatactagttttac |
36128721 |
T |
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| Q |
306 |
taacatttgcgtgtgtgtattattnnnnnnnngtatccatgtggtagacaaagacacacgtgcaccttcaattcagctcacaaacactgacaccac |
401 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36128720 |
taacatttgc--gtgtgtattattaaaaaaaagtatccatgtggtagacaaagacacacgtgcaccttcaattcagctcacaaacactgacaccac |
36128627 |
T |
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