View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_2 (Length: 710)
Name: NF9833_low_2
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 536; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Original strand, 44829749 - 44830412
Alignment:
| Q |
1 |
cagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaatacatcagcacacac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829749 |
cagcttcaagattagcaagatcatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaatacatcagcacacac |
44829848 |
T |
|
| Q |
101 |
accaaacttaattgtgtctctaggacaagttgggtgtgggtgtttgtggctgtgatctttgtgaggtggtgggggacatggaacatatgttgagcttacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44829849 |
accaaacttaattgtgtctctaggacaagttgggtgt------ttgtggctgtgatctttgtgaggtggtgggggacatggaacatatgttgagcttacc |
44829942 |
T |
|
| Q |
201 |
acagtgnnnnnnnggatgttgaggcaaaggagcatagcaaccttggaagccatttggaatgattgaggtgctaatactctttagtttgatttggtgtatg |
300 |
Q |
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| T |
44829943 |
acagtgaaaaataggatgttgaggcaaaggagcatagcaaccttggaagccatttggaatgattgaggtgctaatactctttagtttgatttggtgtatg |
44830042 |
T |
|
| Q |
301 |
agtgagtgagtgatgatgtttgagaggaataagaggggtttttatagggaaaaggattggtgaatttgttgattaaaataactggtttatttggaggccc |
400 |
Q |
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| T |
44830043 |
agtgagtgagtgatgatgtttgagaggaataagagggggctttatagggaaaaggattggtgaatttgttgattaaaataactggtttatttggaggccc |
44830142 |
T |
|
| Q |
401 |
atgtgagtaactgagtgagcctaaggcctcaagattgttcttattactctgtatttgtctcttacaactcaaatcccgttgtcaaatatgtaagaaaatt |
500 |
Q |
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| T |
44830143 |
atgtgagtaactcagtgagcctaaggcctcaagattgttcttattactctgtatttgtctcttacaactcaaatcccgttgtcaaatatgtaagaaaatt |
44830242 |
T |
|
| Q |
501 |
attaaatcatacgtaacattatcaatgttttctactgtgtcataccttgagtaatttcaacaatgtatcatgtaagtacacacctataaacatcgctaat |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||| |||||||||||||| |
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| T |
44830243 |
attaaatcatacgtaacattatcaatgttttctaccgtgtcataccttgagtaattttaacaatgtacca-----------gcctttaaacatcgctaat |
44830331 |
T |
|
| Q |
601 |
tctagtaaaaatcagtgattttaatttgtttatgttggtttgaaaacattttgaactaaactaaaatgtgattaattaacaatgta |
686 |
Q |
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| T |
44830332 |
tctagttaaagtcagtgattttaatttgtttatgttggtttgaagacattttg-----aactaaaatgtgattaattaacaatgta |
44830412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 41820580 - 41820138
Alignment:
| Q |
1 |
cagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaatacatcagcacacac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41820580 |
cagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaatacatcagcacacac |
41820481 |
T |
|
| Q |
101 |
accaaacttaattgtgtctctaggacaagttggg---------------------tgtgggtgtttgtggctgtgatctttgtgaggtggtgggggacat |
179 |
Q |
| |
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||||||||| |||||||||||||| || |||||| || |||||| ||||| |||||||||||||||||||||||||||| |
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| T |
41820480 |
accaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgtgagtggccgtgatctttgtgaggtggtgggggacat |
41820381 |
T |
|
| Q |
180 |
ggaacatatgttgagcttaccacagtgnnnnnnnggatgttgaggcaaaggagcatagcaaccttggaagccatttgga---------atgattgaggtg |
270 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
41820380 |
ggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttggaagccatttggattaatgattaagattaaggtg |
41820281 |
T |
|
| Q |
271 |
ctaatactctttagtttgatttggtgtatgagtgagtgagtgatgatgtttgagaggaataagaggggtttttatagggaaaaggattggtgaatttgtt |
370 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
41820280 |
ctaatactc-ttagtttgatttggtgt----gtgagtgagtgatgatgtttgaga-gaataagaggggattttataggg--aaggattggtgaatttgtt |
41820189 |
T |
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| Q |
371 |
gattaaaataactggtttatttggaggcccatgtgagtaactgagtgagcc |
421 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
41820188 |
gattataataactggtttatttggaggcccatgtgagttactgagggagcc |
41820138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 424 - 548
Target Start/End: Complemental strand, 41818401 - 41818280
Alignment:
| Q |
424 |
aggcctcaagattgttcttattactctgtatttgtctcttacaactcaaatcccgttgtcaaatatgtaagaaaattattaaatc--atacgtaacatta |
521 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |
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| T |
41818401 |
aggcctcaagattgttcttattaccctgtatttgtctattacaactcaaatcccgttgtcaaatatgtaagaa----attaaatcatatacgt-acatta |
41818307 |
T |
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| Q |
522 |
tcaatgttttctactgtgtcatacctt |
548 |
Q |
| |
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||||||||||||| |||||| |||||| |
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| T |
41818306 |
tcaatgttttctattgtgtcctacctt |
41818280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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