View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_20 (Length: 389)
Name: NF9833_low_20
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 6558516 - 6558149
Alignment:
| Q |
19 |
aacatcacaaagggtaagatatcatgaatcatgatacacaatatttaagtctattaatggcaatgaaaacaacatgaagcattgctaat---ttatagaa |
115 |
Q |
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| T |
6558516 |
aacatcacaaagggtaagatatcatgaatcatgatacacaatatttaagtctattaatggctatgaaaacaacttgaagcattgctaatggtttatagaa |
6558417 |
T |
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| Q |
116 |
agaagnnnnnnnn----ccactcaattaaaattcaaagcaaaatcataaacttcacacacaatatatagtccaaaacttctttcatttcccttatcctcc |
211 |
Q |
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| T |
6558416 |
agaaaagaaaaaaaaaaccactcaattaaaattcaaagaaaaatcataaacttcacacacaatatatagtccaaaacttctttcatttcccttatcctcc |
6558317 |
T |
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| Q |
212 |
tatttccttatacctttctcttgttttctctctttctccataacccttccaaaaatgaagttccaagagaaagagcatctctatggaaacaataacaaaa |
311 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6558316 |
tatttccttacacctttctcttgttttctctttttctccataacccttccaaaaatgaagttccaagagaaagagcatctctatggaaacaataacaaaa |
6558217 |
T |
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| Q |
312 |
aacaaatgttaccaaaaataattttattagcaatatttgtcataatcgtagttcttgtcacccctttg |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6558216 |
aacaaatgttaccaaaaataattttattagcaatatttgtcataatcatagttcttgtcacccctttg |
6558149 |
T |
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