View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_21 (Length: 389)
Name: NF9833_low_21
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 190 - 380
Target Start/End: Original strand, 14038352 - 14038542
Alignment:
| Q |
190 |
atttattattttatttaaataacaatatatgatcaactagtgtgaaaaataacaatgatggaataacttgttttctctaccaggaacctccgagatcnnn |
289 |
Q |
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| T |
14038352 |
atttattattttatttaaataacaatatatgatcaactagtgtgaaaaataacaatgatggaataacttgttttctctaccaggaacctccgagatcaaa |
14038451 |
T |
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| Q |
290 |
nnnnnnnnnnnnnnnncctcttgatcgcgaagatgaaccccgtgttccttccgcgacaaagttaatggttctaaacccccgcctcctatgc |
380 |
Q |
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| T |
14038452 |
aaaaaaaaaaaaaaaacctcttgatcgcgaagatgaaccccgtgttccttccgcgacaaagttaatggttctaaacccccgcctcctatgc |
14038542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 14038153 - 14038327
Alignment:
| Q |
19 |
aagaattcaattgaaatgaacgaaatgtttagagatgaatgggatgatgattattgggatgctatcatacagagtggatcagcttcttaacaagcaaaag |
118 |
Q |
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| T |
14038153 |
aagaattcaattgaaatgaacgaaatgtttagagatgaatgggatgataattattgggatgctatcatacagagtggatcagcttcttaacaagcaaaaa |
14038252 |
T |
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| Q |
119 |
cattgaatgttcca---nnnnnnnnngagggaacattgaatgttccatgttgattgttaaattggggtgtctcaa |
190 |
Q |
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| T |
14038253 |
cattgaatgttccattttttttttttgagggaacattgaatgttccatgttgattgttaaattggtgtgtctcaa |
14038327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 14042863 - 14042786
Alignment:
| Q |
31 |
gaaatgaacgaaatgtttagagatgaatgggatgatgattattgggatgctatcatacagagtggatcagcttcttaa |
108 |
Q |
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| T |
14042863 |
gaaatgaatgaaatgtatagagatgaatgggatgataactattgggataccatcattgagaatggatcagcttcttaa |
14042786 |
T |
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