View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_22 (Length: 384)

Name: NF9833_low_22
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_22
NF9833_low_22
[»] chr8 (4 HSPs)
chr8 (18-275)||(39488823-39489071)
chr8 (273-312)||(7351555-7351594)
chr8 (275-318)||(14442762-14442805)
chr8 (279-317)||(33619653-33619691)
[»] chr3 (3 HSPs)
chr3 (275-369)||(27237570-27237664)
chr3 (278-318)||(22418556-22418596)
chr3 (278-323)||(49430631-49430676)
[»] chr6 (1 HSPs)
chr6 (275-364)||(13850492-13850581)
[»] chr4 (3 HSPs)
chr4 (297-363)||(35030373-35030439)
chr4 (278-321)||(51513134-51513177)
chr4 (278-315)||(4939939-4939976)
[»] chr5 (2 HSPs)
chr5 (275-338)||(13475713-13475776)
chr5 (272-318)||(18113840-18113886)
[»] chr1 (3 HSPs)
chr1 (275-318)||(32940695-32940738)
chr1 (273-318)||(37187909-37187954)
chr1 (278-318)||(33403427-33403467)
[»] chr7 (5 HSPs)
chr7 (278-318)||(28998023-28998063)
chr7 (278-318)||(46458000-46458040)
chr7 (275-318)||(46358016-46358059)
chr7 (275-317)||(33081741-33081783)
chr7 (274-315)||(42897765-42897806)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 39488823 - 39489071
Alignment:
Q  18 accgacaacccgatgaagctagataatgatttgnnnnnnntctggtgtaattggtaaaatcagtctcagccatcaaagtaccacattatttcccccgtga 117  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||             
T  39488823 accgacaacccgatgaagctagataatgatttgaaaaaaatctggtgtaattggtaaaatcagtctcagccatcaaagtaccacattattt--------- 39488913  T
Q  118 atttagtgattccttttaagaagcgtgttatgctcttggtttgttaaatgatgacaaggaatttattaacggaattaaagaagcacacaaaacagaaagt 217  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39488914 ----agtgattccttttaagaagcgtgttatgctcttggtttgttaaatgatgacaaggaatttattaacggaattaaagaagcacacaaaacagaaagt 39489009  T
Q  218 ggctgtttgctcagatgtttgtttgtcagac----tattgaacatgagcaccatgaacaacc 275  Q
    |||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||    
T  39489010 ggctgtttgctcagatgtttgtgtgtcagactatatattgaacatgagcaccatgaacaacc 39489071  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Complemental strand, 7351594 - 7351555
Alignment:
Q  273 accatgggcggatctaatatgaaacatggtgtggcagttg 312  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7351594 accatgggcggatctaatatgaaacatggtgtggcagttg 7351555  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 14442762 - 14442805
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    |||||||||| ||| |||||||||||||||||| ||||||||||    
T  14442762 catgggcggagctactatgaaacatggtgtggctgttgccacac 14442805  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 33619691 - 33619653
Alignment:
Q  279 ggcggatctaatatgaaacatggtgtggcagttgccaca 317  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  33619691 ggcggatctactgtgaaacatggtgtggcagttgccaca 33619653  T

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Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 275 - 369
Target Start/End: Complemental strand, 27237664 - 27237570
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccacactagttccatggttagccgagcggtatgcgtctattgaatgatgtgcatgtc 369  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  27237664 catgggcggatctaatatgaaacatggtgtggcaattgccacaccagttccatggttagccgagtggtatgcgtctattgaatgatgtgcgtgtc 27237570  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 22418556 - 22418596
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  22418556 gggcggatctactgtgaaacatggtgtggcagttgccacac 22418596  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 49430676 - 49430631
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgccacactagtt 323  Q
    ||||||||| | | ||||||||||||||||||||||||||| ||||    
T  49430676 gggcggatccactttgaaacatggtgtggcagttgccacaccagtt 49430631  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 13850492 - 13850581
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccacactagttccatggttagccgagcggtatgcgtctattgaatgatgtgc 364  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| || ||||| ||||||||||||    
T  13850492 catgggcggatttaatatgaaacatggtgtggcagttgccacaccagtttcatggttagccgagtggtttgagtctactgaatgatgtgc 13850581  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 35030439 - 35030373
Alignment:
Q  297 catggtgtggcagttgccacactagttccatggttagccgagcggtatgcgtctattgaatgatgtg 363  Q
    |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  35030439 catggtgtggcagttgccacaccagtttcatggttagccgagtggtatgcgtctattgaatgatgtg 35030373  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 51513177 - 51513134
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgccacactag 321  Q
    ||||||||| | | ||||||||||||||||||||||||||||||    
T  51513177 gggcggatccactgtgaaacatggtgtggcagttgccacactag 51513134  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 4939939 - 4939976
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgcca 315  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  4939939 gggcggatccactatgaaacatggtgtggcagttgcca 4939976  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 13475776 - 13475713
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccacactagttccatggttagccgag 338  Q
    |||||||||||||||||||||| |||||||||||  |||||||| |||||||||| ||||||||    
T  13475776 catgggcggatctaatatgaaatatggtgtggcaactgccacaccagttccatggatagccgag 13475713  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 18113886 - 18113840
Alignment:
Q  272 aaccatgggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    |||||||||||||| ||   |||||||||||||||||||||||||||    
T  18113886 aaccatgggcggatgtacattgaaacatggtgtggcagttgccacac 18113840  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 32940695 - 32940738
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32940695 catgggcggatctaatatgaaacatggtgtggcagttgccacac 32940738  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 37187909 - 37187954
Alignment:
Q  273 accatgggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    |||| ||||||||||| | |||||||||||||||||||||||||||    
T  37187909 accaggggcggatctactgtgaaacatggtgtggcagttgccacac 37187954  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 33403427 - 33403467
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  33403427 gggcggatctacactgaaacatggtgtggcagttgccacac 33403467  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 28998023 - 28998063
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  28998023 gggcggatctactgtgaaacatggtgtggcagttgccacac 28998063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 46458040 - 46458000
Alignment:
Q  278 gggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  46458040 gggcggagctactatgaaacatggtgtggcagttgccacac 46458000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 46358059 - 46358016
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccacac 318  Q
    |||||||||||| | | |||||||||||||||||||||||||||    
T  46358059 catgggcggatccagtttgaaacatggtgtggcagttgccacac 46358016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 33081741 - 33081783
Alignment:
Q  275 catgggcggatctaatatgaaacatggtgtggcagttgccaca 317  Q
    |||||||||||||||||||||| ||  ||||||||||||||||    
T  33081741 catgggcggatctaatatgaaatattatgtggcagttgccaca 33081783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 42897806 - 42897765
Alignment:
Q  274 ccatgggcggatctaatatgaaacatggtgtggcagttgcca 315  Q
    ||||||||||||| | | ||||||||||||||||||||||||    
T  42897806 ccatgggcggatccagtttgaaacatggtgtggcagttgcca 42897765  T

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