View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_25 (Length: 366)
Name: NF9833_low_25
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 42926353 - 42926017
Alignment:
| Q |
19 |
atcccggcgagaaagctcgccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaaggaagttgcaagaaaggtgattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926353 |
atcccggcgagaaagctcgccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaaggaagttgcaagaaaggtgattc |
42926254 |
T |
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| Q |
119 |
gtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926253 |
gtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgt |
42926154 |
T |
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| Q |
219 |
tttttcgctcacacgacagagcaacttagggctccgactcaacagagtccccgcagtgtgccctccgttgattcgtacgacggttctcctctcaggcttg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42926153 |
tttttcgctcacacgacagagcaacttagggctccgactcaacagagtccccgcagtgtgccctccgttgattcgtacgacggttctcctctcaggcttg |
42926054 |
T |
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| Q |
319 |
cttttgagtcttcctgtgtgaaaactcttcagttcat |
355 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
42926053 |
cttttgagtcttcctgtgtgaaaactcttcaattcat |
42926017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 34340240 - 34340454
Alignment:
| Q |
19 |
atcccggcgagaaagctcgccgccgtgacccgagaaagtataactactccggcacttcatgtcctgattttcgtaaaggaagttgcaagaaaggtgattc |
118 |
Q |
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|||||||||||||||| ||||||||||| ||||| |||| | | |||||||| || | |||||||||||||||||||| | || ||||||||||| | |
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| T |
34340240 |
atcccggcgagaaagcacgccgccgtgatccgaggaagtttcattactccggtacggcgtgtcctgattttcgtaaaggtaactgtaagaaaggtgacgc |
34340339 |
T |
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| Q |
119 |
gtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgt |
218 |
Q |
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|||||| || |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
34340340 |
gtgtgaacacgcgcatggtgttttcgagtgttggcttcatcctgcacgttaccgtactcagccgtgtaaagacggaaccagctgtcgccggcgtgtttgc |
34340439 |
T |
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| Q |
219 |
tttttcgctcacacg |
233 |
Q |
| |
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|| |||||||||||| |
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| T |
34340440 |
ttcttcgctcacacg |
34340454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 47893944 - 47894033
Alignment:
| Q |
108 |
aaaggtgattcgtgtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaacc |
197 |
Q |
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||||||||||| || | || |||||||||||||| || || |||||||||||||| |||||| | ||||||| ||||| ||||||||| |
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| T |
47893944 |
aaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaacc |
47894033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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