View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_26 (Length: 360)

Name: NF9833_low_26
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_26
NF9833_low_26
[»] chr2 (4 HSPs)
chr2 (1-348)||(38581891-38582238)
chr2 (1-348)||(38617252-38617607)
chr2 (71-279)||(38606566-38606774)
chr2 (85-348)||(38563683-38563955)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 38582238 - 38581891
Alignment:
Q  1 tgcaagttgcagcagcatcataatgcaattaaaccaaaattgcggtcacatttgcatgtgtaaaggtttgcatgtgtgtatgtgtatatatacctgggca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38582238 tgcaagttgcagcaacatcataatgcaattaaaccaaaattgcggtcacatttgcatgtgtaaaggtttgcatgtgtgtatgtgtatatatacctgggca 38582139  T
Q  101 tgcacggtatgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataa 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38582138 tgcacggtatgaagaagtgaatcaccagttaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcacagaaaataa 38582039  T
Q  201 aatgttcatcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccata 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  38582038 aatgttcatcaaccccacatgttacaatcacttgtagagtggatcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccata 38581939  T
Q  301 atcaccacgtggtctcttcttgtttcccattaaactttctttcttctc 348  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38581938 accaccacgtgatctcttcttgtttcccattaaactttctttcttctc 38581891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 38617252 - 38617607
Alignment:
Q  1 tgcaagttgcagcagcatcataatgcaattaaaccaaaattgcggtcacatttgcatgtgtaaaggtttgcatgtgtgt--------atgtgtatatata 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  38617252 tgcaagttgcagcaacatcataatgcaattaaaccaaaattgcggtcacatttgcatgtgtaaaggtttgcatgtgtgtatcagtgtatgtgtatatata 38617351  T
Q  93 cctgggcatgcacggtatgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcaca 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38617352 cctgggcatgcacggtatgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcataatttcaca 38617451  T
Q  193 gaaaataaaatgttcatcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttcctttt 292  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  38617452 gaaaataaaatgtttatcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctatttttggcaactttattatgcttcctttt 38617551  T
Q  293 gctccataatcaccacgtggtctcttcttgtttcccattaaactttctttcttctc 348  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||    
T  38617552 gctccataaccaccacgtgatctcttcttgtttcccattaaactttcttttttctc 38617607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 71 - 279
Target Start/End: Complemental strand, 38606774 - 38606566
Alignment:
Q  71 catgtgtgtatgtgtatatatacctgggcatgcacggtatgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcat 170  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  38606774 catgtgtgtatgtatatatatacctgagcatgtacggtatgaagaagtgaatggccagtcaaagaagtatttgaagaaataacctcaacgttctcttcat 38606675  T
Q  171 gcagtattctcataatttcacagaaaataaaatgttcatcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcgg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| ||    
T  38606674 gcagtattctcataatttcacagaaaataaaatgttcatcaaccccacatgttacaattatttgtagagtgggtcccatttcatggatctctatttttgg 38606575  T
Q  271 aaactttat 279  Q
     ||||||||    
T  38606574 caactttat 38606566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 85 - 348
Target Start/End: Complemental strand, 38563955 - 38563683
Alignment:
Q  85 tatatatacctgggcatgcacggtatgaagaagtgaatcaccagtcaaagaagaatttgaagaaataacctcaacgttctcttcatgcagtattctcata 184  Q
    |||||||||||| ||| |||| |||||||||||||||||||| | |||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  38563955 tatatatacctgagcaagcacagtatgaagaagtgaatcaccggccaaagaagaatttgaagagataacatcgacgttctcttcatgcagtattctcata 38563856  T
Q  185 atttcacagaaaataaaatgttcatcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||    |||||    
T  38563855 atttcacagaaaataaaatgttcatcaaccccacatgttacaatcacttgtagagtgggtcctatttcatgaatctctatttttggcaact---ctatgc 38563759  T
Q  285 ttccttttgctccataa------------tcaccacgtggtctcttcttgtttcccattaaactttctttcttctc 348  Q
    ||||||| |||||||||             ||||||||| ||||||||||||||||||||||||||||||||||||    
T  38563758 ttcctttcgctccataagaactcgaccagccaccacgtgatctcttcttgtttcccattaaactttctttcttctc 38563683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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