View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_29 (Length: 329)
Name: NF9833_low_29
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 36722652 - 36722948
Alignment:
| Q |
13 |
taggcccagtcaaagattcaacagtactactcatactgcttgaagtaggccaattaacctgaacaacttcaggctcaacaaatttcaaaacctcagcccg |
112 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36722652 |
taggcccactcaaagattcaacagtactactcatactgcttgaagtaggccaattaacctgaacaacttcaggttcaacaaatttcaaaacctcagcccg |
36722751 |
T |
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| Q |
113 |
acgattatcaacagcaaccagaggctgaggattctgagcggccgcagctgcagtctcagccgcaaggatatgttcagggatagggaaattagttttcgcc |
212 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722752 |
acggttatcaacagcaaccaaaggctgaggattctgagcggccgcagctgcagtctcagccgcaaggatatgttcagggatagggaaattagttttcgcc |
36722851 |
T |
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| Q |
213 |
ttccaagcgcgaaatttaatcgcggctgaatcataagcatgtgcagcttcttcagcggtatcaaaggtccccaaccagactcgagctttcttccagg |
309 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722852 |
ttcgaagcgcgaaatttaatcgcggctgaatcataagcatgtgcagcttcttcagcggtatcaaaggtccccaaccagactcgagctttcttccagg |
36722948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 36709783 - 36710085
Alignment:
| Q |
13 |
taggcccagtcaaagattcaacagtactactcatactgcttgaagtaggccaattaacctgaacaacttcaggctcaacaaatttcaaaacctcagcccg |
112 |
Q |
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|||||||| | ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | |
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| T |
36709783 |
taggcccactgaaagactcaacggtactactcataccgcttgaagtaggccaattaacctgaacaacatctggctcaacaaatttcaaaacctcagccgg |
36709882 |
T |
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| Q |
113 |
acgattatcaacagcaaccagaggctgaggattctgagcggccgcagctgcagtct------cagccgcaaggatatgttcagggatagggaaattagtt |
206 |
Q |
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| T |
36709883 |
ccggttatcaacagcagccggaggctgaggattttgagcggccacggctgcagtctcagccgcagccgcaagaatatgttcaggaatagggaaattagtt |
36709982 |
T |
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| Q |
207 |
ttcgccttccaagcgcgaaatttaatcgcggctgaatcataagcatgtgcagcttcttcagcggtatcaaaggtccccaaccagactcgagctttcttcc |
306 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||| ||| |||||||| | ||||| ||||| || || | |||||||| |
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| T |
36709983 |
ttcgccttcgaagcgcgaaatttaatcgcggctgaatcatacgcaagtgcggcttgttctgcggtatcgtaagtccctaaccatacacgggttttcttcc |
36710082 |
T |
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| Q |
307 |
agg |
309 |
Q |
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||| |
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| T |
36710083 |
agg |
36710085 |
T |
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