View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_30 (Length: 328)

Name: NF9833_low_30
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_30
NF9833_low_30
[»] chr3 (6 HSPs)
chr3 (4-310)||(40591257-40591563)
chr3 (4-310)||(40601907-40602213)
chr3 (24-310)||(40568351-40568637)
chr3 (19-310)||(40597739-40598030)
chr3 (24-310)||(40579409-40579695)
chr3 (24-301)||(40572961-40573238)
[»] chr2 (4 HSPs)
chr2 (24-310)||(2015099-2015385)
chr2 (186-282)||(11845091-11845187)
chr2 (186-282)||(11849820-11849916)
chr2 (186-238)||(11853055-11853107)
[»] chr4 (5 HSPs)
chr4 (126-296)||(14153418-14153584)
chr4 (98-202)||(14022898-14023002)
chr4 (115-295)||(13765643-13765822)
chr4 (104-301)||(14155044-14155228)
chr4 (151-297)||(14023226-14023372)
[»] chr1 (2 HSPs)
chr1 (198-302)||(1868400-1868504)
chr1 (198-244)||(1842849-1842895)


Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 40591563 - 40591257
Alignment:
4 ttgcaatgagatggacatcaaggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagc 103  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
40591563 ttgcaatgagattgacatcgaggaggatgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaggactccagc 40591464  T
104 agtttcttttgctattcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattca 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
40591463 agtttcttttgctattcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattca 40591364  T
204 taaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
40591363 taaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccacttcattgatgaatg 40591264  T
304 gctcaat 310  Q
    |||||||    
40591263 gctcaat 40591257  T

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Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 40602213 - 40601907
Alignment:
4 ttgcaatgagatggacatcaaggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagc 103  Q
    |||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
40602213 ttgcaatgagattgccatctaggaggatgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaagactccagc 40602114  T
104 agtttcttttgctattcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattca 203  Q
    ||||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||| || |||    
40602113 agtttctgttgctattcttaatcttgtgttccatgtaagctttatagactggttttgatcatgaagatgatcataaacagtaccattggaaataaactca 40602014  T
204 taaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatg 303  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    ||||||||||||||||||||||| |||||||| || ||||||||||||||| |    
40602013 taaacaagcaatggaacttctgtttctaaacagcaacccaaaagctgtaccacatttctatggttgatttgagaaagaatgatcacttcattgatgaacg 40601914  T
304 gctcaat 310  Q
    |||||||    
40601913 gctcaat 40601907  T

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Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 40568637 - 40568351
Alignment:
24 aggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattctta 123  Q
    ||||| || ||||||||||| | ||||||||| |||||||| || ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||    
40568637 aggagtatatttgtagatttcacatctctatgtatgattggtgttgaagccgcagagtgtaagtatgccaggactccagcagtttcttttgctattctta 40568538  T
124 accttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttc 223  Q
    | || ||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||    
40568537 atctggttttccatgtaagttttatagtttggttttgatcatgaagatgctcgtaaacagtgccgttggaaatgaattcataaacaagcaagggaacttc 40568438  T
224 tgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaat 310  Q
    ||||||||||||||||||||| |   ||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
40568437 tgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttcattgatgaacggctcaat 40568351  T

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Target: chr3; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 40598030 - 40597739
Alignment:
19 catcaaggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctat 118  Q
    ||||||| || || ||||||||||| | ||||||||| |||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
40598030 catcaagtagtatatttgtagatttgacatctctatgtatgattggtgtggaagcagcagaatgtaagtatgccaggactccagcagtttcttttgctat 40597931  T
119 tcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatgga 218  Q
    ||| || |||||||||||||| |||||| |||||| |||||| ||||||| ||| || ||||| || ||||||||||| |||||||||||||||||||||    
40597930 tctcaatcttgttttccatgtaagctttctagattcgttttggtcatgaatatgctcataaactgtaccattgggaataaattcataaacaagcaatgga 40597831  T
219 acttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaat 310  Q
    |||||||| |||||||||||||| | || | |||||||||| |||||||||||||  ||||| ||| |||||||||||||||| | ||||||    
40597830 acttctgtttctaaacaacaacctacaagttttaccacattcctatggttgatttgggaaagcacggccacttcattgatgaacgactcaat 40597739  T

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Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 40579695 - 40579409
Alignment:
24 aggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattctta 123  Q
    ||||| || |||| |||||| | ||||||||| |||||||| |||||||| ||||| ||||| |||||||  || ||||||| ||| |||||||||||||    
40579695 aggagtatatttgaagatttcacatctctatgtatgattggtgtagaagcagcagagtgtaaatatgccagcacaccagcagcttcctttgctattctta 40579596  T
124 accttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttc 223  Q
    | |||||||||||||| ||||| ||||||||| ||| |||||||||||| || |||||||| ||||||||||| ||||| |||||||| || ||||||||    
40579595 atcttgttttccatgtaagcttcatagattgggtttcatcatgaagatgctcataaacagtaccattgggaataaattcgtaaacaagtaacggaacttc 40579496  T
224 tgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaat 310  Q
    ||||||||||||||||||||||||  |||||||||||||||| |||||||  ||||||| |||||||||||||||||| | ||||||    
40579495 tgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaatgaccacttcattgatgaacgactcaat 40579409  T

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Target: chr3; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 24 - 301
Target Start/End: Complemental strand, 40573238 - 40572961
Alignment:
24 aggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattctta 123  Q
    ||||| || |||| |||||| | ||||||||| |||||||| || ||||| ||||| ||||||||||||| ||| || ||  |||||||||  |||||||    
40573238 aggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctatttcttttgaaattctta 40573139  T
124 accttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttc 223  Q
    |||||||||||||||| ||||||||||||||| |||  ||||||||||| || |||||||| ||||||||||| |||||||| ||||  || ||||||||    
40573138 accttgttttccatgtaagctttatagattgggtttcgtcatgaagatgctcataaacagtaccattgggaataaattcatacacaactaagggaacttc 40573039  T
224 tgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaa 301  Q
    ||||||||||||||| ||||| ||  ||||||||||||||||||||||||  ||||| ||||||||||||||||||||    
40573038 tgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaa 40572961  T

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Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 24 - 310
Target Start/End: Original strand, 2015099 - 2015385
Alignment:
24 aggaggatgtttgtagattttatatctctatgaatgattggagtagaagctgcagaatgtaagtatgccaagactccagcagtttcttttgctattctta 123  Q
    ||||| ||||||| |||||| | ||||||||| |||||||| ||||| || |||||||| |||||||| | ||||||||||||||||||||||||||| |    
2015099 aggagtatgtttgaagatttcacatctctatgtatgattggtgtagatgcagcagaatgcaagtatgctaggactccagcagtttcttttgctattctca 2015198  T
124 accttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttc 223  Q
    | |||||||||||||| ||||||| || | | ||||||||||||||||| || |||||||| ||||||||||||||||| |||||||| || ||||||||    
2015199 atcttgttttccatgtaagctttaaagttggattttgatcatgaagatgctcataaacagtaccattgggaatgaattcgtaaacaagtaaaggaacttc 2015298  T
224 tgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaatggctcaat 310  Q
    ||||||||||||||||||||| |   ||||||||||||||||||||||||  ||||| || | ||||||||||||||| ||||||||    
2015299 tgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaacggctcaat 2015385  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 11845187 - 11845091
Alignment:
186 ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaa 282  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || ||  | ||||||||||||| ||||||||  |||||||    
11845187 ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaagaa 11845091  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 11849916 - 11849820
Alignment:
186 ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaa 282  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |||||||| || || ||  | ||||||||||||| ||||||||  |||||||    
11849916 ccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaagaa 11849820  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 11853107 - 11853055
Alignment:
186 ccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaaca 238  Q
    |||||| ||||||||||||||| |||||||||||  | |||||| ||||||||    
11853107 ccattgagaatgaattcataaataagcaatggaatatttgtctccaaacaaca 11853055  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 14153418 - 14153584
Alignment:
126 cttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctg 225  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||  |||||| | ||||| | ||| ||||| ||||||||    ||||||||||    
14153418 cttgttttccatgtaagctttaaagattggttttgatcatgaagatgataataaacaataccatt-gcaataaattcgtaaacaag----ggaacttctg 14153512  T
226 tctc-taaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattg 296  Q
    |||| |||| ||||||||||||   ||||||||||| ||||||||||||  |||||||||||||||| ||||    
14153513 tctcttaaaaaacaacccaaaagatttaccacatttatatggttgatttgggaaagaacgaccactttattg 14153584  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 14022898 - 14023002
Alignment:
98 tccagcagtttcttttgctattcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatg 197  Q
    ||||||| |||||||||||||||| || |||||||||||||| ||| ||| |||||||||||||||||||||||| || |||||||| ||||||| |||     
14022898 tccagcaatttcttttgctattctcaatcttgttttccatgtaagcgttaaagattggttttgatcatgaagatgctcataaacagtaccattggaaata 14022997  T
198 aattc 202  Q
    |||||    
14022998 aattc 14023002  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 295
Target Start/End: Original strand, 13765643 - 13765822
Alignment:
115 ctattcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaa 214  Q
    ||||||| || |||||||||||||| ||| ||| ||||||| ||||||||| || |||  | |||||| |  | || ||||| ||||| |||| ||| ||    
13765643 ctattctcaatcttgttttccatgtaagcattaaagattggctttgatcattaatatgcgcataaacaatatcgttaggaataaattcgtaaagaagtaa 13765742  T
215 tggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcatt 295  Q
     ||||||||||||||||||||||||| |||||   ||||||||||| || |||||||||||||| ||| ||| || |||||    
13765743 gggaacttctgtctctaaacaacaactcaaaaaatttaccacattt-tacggttgattttagaatgaatgactacatcatt 13765822  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 301
Target Start/End: Complemental strand, 14155228 - 14155044
Alignment:
104 agtttcttttgctattcttaaccttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattca 203  Q
    |||||||||||| ||||| |  ||||| ||||| || ||||||| |||||||||||||||||||||||| ||  ||||||| |||||| |||| |||||     
14155228 agtttcttttgccattctcattcttgtattccaagtaagctttaaagattggttttgatcatgaagatgctcaaaaacagtaccattgagaataaattcg 14155129  T
204 taaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattgatgaa 301  Q
    ||||||            | ||||||||| |||||| ||||||   |||||||||||||||| |||||||  |||||||| |||| ||||||||||||    
14155128 taaaca------------tgtgtctctaagcaacaa-ccaaaagctttaccacatttctatgattgatttgggaaagaacaaccatttcattgatgaa 14155044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 297
Target Start/End: Complemental strand, 14023372 - 14023226
Alignment:
151 attggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttctgtctctaaacaa-caacccaaaattc 249  Q
    |||| ||||||||||||| |||||  |||| ||| ||||||  ||| |||||||||||||| ||  |||||||||||| |||| || ||||||||||       
14023372 attgcttttgatcatgaaaatgatactaaagagtaccattgc-aataaattcataaacaagtaagagaacttctgtctttaaaaaaacaacccaaaagaa 14023274  T
250 ttaccacatttctatggttgattttagaaagaacgaccacttcattga 297  Q
    | ||||||||| |||| |||||||| |||||||||||||||| |||||    
14023273 tcaccacatttatatgattgattttggaaagaacgaccactttattga 14023226  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 1868504 - 1868400
Alignment:
198 aattcataaacaagcaatggaacttctgtctctaaacaacaacccaaaattcttaccacatttctatggttgattttagaaagaacgaccacttcattga 297  Q
    ||||||||||| | ||| ||||||||||||||||||||||| ||||| | | | || ||||| ||||| || |||| ||| ||||| ||||| ||||| |    
1868504 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaaccacctcattaa 1868405  T
298 tgaat 302  Q
    |||||    
1868404 tgaat 1868400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 1842895 - 1842849
Alignment:
198 aattcataaacaagcaatggaacttctgtctctaaacaacaacccaa 244  Q
    ||||||||||| | ||| ||||||||||||||||||||||| |||||    
1842895 aattcataaaccaacaaaggaacttctgtctctaaacaacaccccaa 1842849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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