View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_32 (Length: 325)
Name: NF9833_low_32
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 42301365 - 42301673
Alignment:
| Q |
1 |
tgcatattgcatgtgttttaacactcttgtttccaaaaatgaatggaacttcaattgtgatgagtttgctatataacattgtcatcggtctgtcacacac |
100 |
Q |
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| T |
42301365 |
tgcatattgcatgtgttttaacactcttgtttccaaaaatgaatggaacttcaattgtgatgagtttgctatataacattgtcatcggtctgtcacacac |
42301464 |
T |
|
| Q |
101 |
taattctttgttttattgtaatggaccagatgttcttttccacttcaatatttgcatgacgaccacctcatacaatgctatggtaataatttggttgaga |
200 |
Q |
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| T |
42301465 |
taattctttgttttattgtaatggaccagatgttcttttccacttcaatatttgcacgacgaccacctcatgcaatgctatggtaataatttggttgaga |
42301564 |
T |
|
| Q |
201 |
tttaagtgagtgcaaatattctttagctttcttgctatcttgtgtgtagacaattttcactcgcatgcatgtgaagagtttagttgattctcctcgcatg |
300 |
Q |
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| T |
42301565 |
tttaagtgagtgcaaatattctttagctttcttgctatcttgtgtgtagacaattttcactcgcatgcatgtgaagagtttagttgattctccttgcatg |
42301664 |
T |
|
| Q |
301 |
catgaatat |
309 |
Q |
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||||||||| |
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| T |
42301665 |
catgaatat |
42301673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 32355951 - 32355857
Alignment:
| Q |
101 |
taattctttgttttattgtaatggaccagatgttcttttccacttcaatatttgcatgacgaccacctcatacaatgctatggtaataatttggttgag |
199 |
Q |
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| T |
32355951 |
taattccttgtgttatcataatggaccagatgttctttgccacttcatta-ttgcat---gcccacctcatgcaatgggatgatgataatttggttgag |
32355857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 17922091 - 17922040
Alignment:
| Q |
101 |
taattctttgttttattgtaatggaccagatgttcttttccacttcaatatt |
152 |
Q |
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|||||| || ||||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
17922091 |
taattccttcttttattataatggatcagatgttcttttccacttcattatt |
17922040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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