View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_33 (Length: 325)
Name: NF9833_low_33
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 7432363 - 7432061
Alignment:
| Q |
19 |
taaatagtcgaatgattgtattagaacaccaacgaacgatagaaaaataaaataaaagaatatcgcaagacacatagacacatactttgttcatgtagtt |
118 |
Q |
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| T |
7432363 |
taaatagtcgaatgattgtattagaacaccaacaaacgataaaaaaataaaataaaagaatatcgcaagacacatagacacatacttt---catgtagtt |
7432267 |
T |
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| Q |
119 |
tgacaaata---atgcacacttttgcgactatagaacaactaaatctctaata-----tttctttagatgaaatatggttacaatgttacgattagtata |
210 |
Q |
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| T |
7432266 |
tgacaaatagtaatgtacacttttgcgactataaaacaactaaatctctaatactgtatttcttttgatgaaatagggctacagtgttacgattagtata |
7432167 |
T |
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| Q |
211 |
cgcaatactacaatccatattacaaacaatactcttgagctccttcttttgatgaattaagatttacaatgttcgcaatgatacattgacttagctcact |
310 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7432166 |
cgcaatactacaatccagattacaaacaatactcttgagctccttcttttcatgaattaagatttacaatgttcgcaatgatacattgacttagctcact |
7432067 |
T |
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| Q |
311 |
ctctgc |
316 |
Q |
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|||||| |
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| T |
7432066 |
ctctgc |
7432061 |
T |
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