View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9833_low_34 (Length: 322)
Name: NF9833_low_34
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 17793398 - 17793094
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17793398 |
catcatccatttcacaggcccctcaagaagagagctct-gataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
17793300 |
T |
|
| Q |
101 |
acaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17793299 |
acaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagt |
17793200 |
T |
|
| Q |
201 |
taggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17793199 |
taggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaac |
17793100 |
T |
|
| Q |
301 |
agaatt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
17793099 |
agaatt |
17793094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 50 - 306
Target Start/End: Complemental strand, 17797648 - 17797392
Alignment:
| Q |
50 |
tgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatag |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17797648 |
tgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttgttattcaattcaaacgtacaaatag |
17797549 |
T |
|
| Q |
150 |
aaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797548 |
aaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggag |
17797449 |
T |
|
| Q |
250 |
gaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17797448 |
gaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
17797392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 20334260 - 20334308
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatt |
49 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||||||||| |
|
|
| T |
20334260 |
catcatccatttcacaagtccctcaagaagagagctctggataccaatt |
20334308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 7033978 - 7033674
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033978 |
catcatccatttcacaggcccctcaagaagagagctc-agataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
7033880 |
T |
|
| Q |
101 |
acaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7033879 |
acaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagt |
7033780 |
T |
|
| Q |
201 |
taggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7033779 |
taggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaac |
7033680 |
T |
|
| Q |
301 |
agaatt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
7033679 |
agaatt |
7033674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 49 - 306
Target Start/End: Complemental strand, 7038231 - 7037974
Alignment:
| Q |
49 |
ttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaata |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038231 |
ttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaata |
7038132 |
T |
|
| Q |
149 |
gaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaagga |
248 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7038131 |
gaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacaatagaatactagaattaaactgattgctgaaaacaagga |
7038032 |
T |
|
| Q |
249 |
ggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7038031 |
ggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
7037974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 1541276 - 1540972
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541276 |
catcatccatttcacaggcccctcaagaagagagctct-gataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
1541178 |
T |
|
| Q |
101 |
acaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1541177 |
acaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagt |
1541078 |
T |
|
| Q |
201 |
taggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541077 |
taggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactaaactagaaattaggagaacatatttaaaatattcaaaat |
1540978 |
T |
|
| Q |
301 |
agaatt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
1540977 |
agaatt |
1540972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 47 - 306
Target Start/End: Complemental strand, 1545529 - 1545270
Alignment:
| Q |
47 |
atttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1545529 |
atttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaaaagtaaatttcttattcaattcaaacgtacaaa |
1545430 |
T |
|
| Q |
147 |
tagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaag |
246 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1545429 |
tagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaag |
1545330 |
T |
|
| Q |
247 |
gaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1545329 |
gaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
1545270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 25428526 - 25428478
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatt |
49 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||| |||||||||| |
|
|
| T |
25428526 |
catcatccatttcacatgtccctcaagaatagagctcttgataccaatt |
25428478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 26400909 - 26400605
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400909 |
catcatccatttcacaggcccctcaagaagagagcttt-gatatctatttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctaga |
26400811 |
T |
|
| Q |
101 |
acaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagacaataactgcccactaatatcatgttcctataagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26400810 |
acaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagt |
26400711 |
T |
|
| Q |
201 |
taggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaac |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26400710 |
taggccacgatagaatactagaattaaactgattgctgaaaacaaggaggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaat |
26400611 |
T |
|
| Q |
301 |
agaatt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
26400610 |
agaatt |
26400605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 49 - 306
Target Start/End: Complemental strand, 26405160 - 26404903
Alignment:
| Q |
49 |
ttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaata |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26405160 |
ttgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaata |
26405061 |
T |
|
| Q |
149 |
gaaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaagga |
248 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26405060 |
gaaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaagga |
26404961 |
T |
|
| Q |
249 |
ggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26404960 |
ggaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
26404903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 50 - 306
Target Start/End: Complemental strand, 28914504 - 28914248
Alignment:
| Q |
50 |
tgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatag |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28914504 |
tgttatgattttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaaattcttattcaattcaaacgtacaaatag |
28914405 |
T |
|
| Q |
150 |
aaaagtacagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggag |
249 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28914404 |
aaaagtacagaatagaaaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagaattaaactgattgctgaaaacaaggag |
28914305 |
T |
|
| Q |
250 |
gaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28914304 |
gaaataaaactgaactagaaattaggagaacatatttaaaatattcaaaacagaatt |
28914248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 49211085 - 49211037
Alignment:
| Q |
1 |
catcatccatttcacaggcccctcaagaagagagctctagataccaatt |
49 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
49211085 |
catcatccatttcacaggtccctcaagaatagagctctagataccaatt |
49211037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 57 - 304
Target Start/End: Original strand, 30505830 - 30506075
Alignment:
| Q |
57 |
attttgtaaagttgcagaggaaaagattaaaggtggttgctagaacaagtggaagaagagtaaatttcttattcaattcaaacgtacaaatagaaaagta |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
30505830 |
attttgtaaagttgcagaggaaaagattaaaggtagttgctagaacaagtggaagaagagtatgtttttcattcaattcaaacgtacaaatagaaaagta |
30505929 |
T |
|
| Q |
157 |
cagaatagacaataactgcccactaatatcatgttcctataagttaggccacgatagaatactagagttaaactgattgctgaaaacaaggaggaaataa |
256 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||||||||| | ||| || ||||||||||| ||||||||| | |
|
|
| T |
30505930 |
cagaatagaaaataactgcccattgatatcatgttcctataagttaggccacgacagaatacta-aaaaaaaatgcttgctgaaaactaggaggaaaaga |
30506028 |
T |
|
| Q |
257 |
aactgaactagaaattaggagaacatatttaaaatattcaaaacagaa |
304 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
30506029 |
aactgaactagaaactagga-aacatatttaaaagattcaaaacagaa |
30506075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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