View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_35 (Length: 320)
Name: NF9833_low_35
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 49654757 - 49655069
Alignment:
| Q |
1 |
tgacccttatcagtttcaatctacgcctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcannnnnnnn |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654757 |
tgacccttatcagtttcaatctacacctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtgatgttgcatttttttt |
49654856 |
T |
|
| Q |
101 |
--ctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654857 |
ttctgattttgtttgttctgttataggatagttttgttatggtaattttgtaattgacacaagtttagcttatagtatgtggtttatgtccttagtttag |
49654956 |
T |
|
| Q |
199 |
tcggggggctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatg |
298 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654957 |
tcgggg--ctaattttacatttagaagatcttagtcttaacactggaaatgctctgctcatagctttagcttattttgattttggactaaactgtaaatg |
49655054 |
T |
|
| Q |
299 |
atgttctaatagcct |
313 |
Q |
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||||||||||||||| |
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| T |
49655055 |
atgttctaatagcct |
49655069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16486404 - 16486487
Alignment:
| Q |
1 |
tgacccttatcagtttcaatctacgcctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
84 |
Q |
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| T |
16486404 |
tgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
16486487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21816506 - 21816423
Alignment:
| Q |
1 |
tgacccttatcagtttcaatctacgcctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtg |
84 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| |
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| T |
21816506 |
tgacccttatcagtttcaatctacacctttgattccctttgggttcttcggtgatgaaaatgcaagtgggtgttctgttatgtg |
21816423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 14381288 - 14381210
Alignment:
| Q |
7 |
ttatcagtttcaatctacgcctttgattccctttgagttcttcagtgatgaaaatgcaaatgggtgttctattatgtga |
85 |
Q |
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||||||| |||||||| || ||| |||| |||||||| || |||||||||||||||| ||| ||||| ||||||||| |
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| T |
14381288 |
ttatcaggttcaatctggaccgttggttccttttgagttatttagtgatgaaaatgcaagtggatgttccattatgtga |
14381210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 8551537 - 8551505
Alignment:
| Q |
211 |
ttttacatttagaagatcttagtcttaacactg |
243 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
8551537 |
ttttacatttagaagatcttagtcttgacactg |
8551505 |
T |
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