View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_36 (Length: 318)
Name: NF9833_low_36
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 36508702 - 36508994
Alignment:
| Q |
11 |
cataggtgatgttttcctaccttgtcgccttccaagtcatcacatagccttagaattttggctgttgtagatataatggttgggaagtcatccattagag |
110 |
Q |
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| T |
36508702 |
cataggtgatgttttcctaccttatcgccttccaagtcatcacatagccttagaattttggctgttgtagatataatggttgggaagtcatccattagag |
36508801 |
T |
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| Q |
111 |
acacggttttctcagttataccttgacccatggaaaagaaagcatgcacaagtatcacgtgtaccccagtgcttactatggcattcttcaaatactcctc |
210 |
Q |
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| T |
36508802 |
acacggttttctcagttataccttgacccatgcaaaagaaagcatgcacaagtatcacgtgtaccccagtgcttactatggcattcttcaaatactcctc |
36508901 |
T |
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| Q |
211 |
tgactttggaacattcccagaagcaaaccattttgcttcttgcaagaaagcattcaagagtcttacccactgtaattaattaacaaccaaatt |
303 |
Q |
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| T |
36508902 |
tgactttggaacattcccagaagcaaaccattttgcttcttgcaagaaagcattcaagagtcttacccactgtaattaattaacaaccaaatt |
36508994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 37339259 - 37339314
Alignment:
| Q |
14 |
aggtgatgttttcctaccttgtcgccttccaagtcatcacatagccttagaatttt |
69 |
Q |
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| T |
37339259 |
aggtaatgttttcttaccttgtcgctttccaagtcatcacataaccttagaatttt |
37339314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 37339930 - 37339997
Alignment:
| Q |
80 |
gatataatggttgggaagtcatccattagagacacggttttctcagttataccttgacccatggaaaa |
147 |
Q |
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| T |
37339930 |
gatataatggtagggaagttgtccattagagactcggttttttcaattatatctttacccatgtaaaa |
37339997 |
T |
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