View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_38 (Length: 314)

Name: NF9833_low_38
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_38
NF9833_low_38
[»] chr4 (1 HSPs)
chr4 (1-301)||(22465423-22465720)
[»] scaffold1107 (1 HSPs)
scaffold1107 (59-295)||(85-320)
[»] scaffold0067 (1 HSPs)
scaffold0067 (59-295)||(13616-13851)
[»] chr8 (4 HSPs)
chr8 (49-301)||(31036650-31036901)
chr8 (1-130)||(2994761-2994890)
chr8 (1-132)||(5560876-5561007)
chr8 (50-157)||(25577645-25577751)
[»] chr6 (3 HSPs)
chr6 (1-129)||(33457898-33458026)
chr6 (50-298)||(25422627-25422874)
chr6 (1-130)||(34822056-34822185)
[»] chr3 (2 HSPs)
chr3 (80-296)||(19474328-19474543)
chr3 (1-130)||(37190335-37190464)
[»] scaffold0779 (1 HSPs)
scaffold0779 (50-157)||(2181-2287)
[»] chr2 (2 HSPs)
chr2 (50-219)||(18503156-18503324)
chr2 (50-157)||(26363276-26363382)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 22465720 - 22465423
Alignment:
Q  1 atttgttgatggaacgattcctctagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22465720 atttgttgatggaacgattcctccagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 22465621  T
Q  101 tcagtttctccttcaattgcacaatctattatatttcatggagaatgcatgtgatgtatgaagtgatttaaatgagcatttcgcacaaagtgatttggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  22465620 tcagtttctccttcaattgcacaatctattatatttcatggagaatgcatgtgatgtatgaagtgatttaaatgagcatttcgcacaaagtgatttgg-- 22465523  T
Q  201 agaatctttgaactgatgcnnnnnnnttattctttgcaacaagattctaaatatgttacatctttctactctgagttgaagattctgtgggaggaatttg 300  Q
     ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22465522 -gaatctttgaactgatgcaaaaaatttattctttgcaacaagattctaaatatgttacatctttctactctgggttgaagattctgtgggaggaatttg 22465424  T

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Target: scaffold1107 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 59 - 295
Target Start/End: Complemental strand, 320 - 85
Alignment:
Q  59 tggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgcatgtgatgta 158  Q
    ||||||||||| || ||||| ||||||| ||||||  | |||| ||||||||| |||||||||||||| ||| | || |||||| ||||||||||||||     
T  320 tggaatcgctgcaacatgttagttcacttttggattatgaatttagtttctccctcaattgcacaatcaattgtctt-catggaaaatgcatgtgatgtt 222  T
Q  159 tgaagtgatttaaatgagcatttcgcacaaagtgatttggtaagaatctttgaactgatgcnnnnnnnttattctttgcaacaagattctaaatatgtta 258  Q
    || ||||||||||| || | |||||||||| | ||||||||| |||| | |||| | ||||       |||  ||||||||||||||||||| | |||||    
T  221 tggagtgatttaaaggaacgtttcgcacaaggcgatttggtatgaatatctgaattaatgcaagaaatttacactttgcaacaagattctaagtttgtta 122  T
Q  259 catctttctactctgagttgaagattctgtgggagga 295  Q
    | ||||||||||| |||| |||||||  |||||||||    
T  121 cttctttctactccgagtggaagatttcgtgggagga 85  T

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Target: scaffold0067 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 59 - 295
Target Start/End: Complemental strand, 13851 - 13616
Alignment:
Q  59 tggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgcatgtgatgta 158  Q
    ||||||||||| || ||||| ||||||| ||||||  | |||| ||||||||| |||||||||||||| ||| | || |||||| ||||||||||||||     
T  13851 tggaatcgctgcaacatgttagttcactattggattatgaatttagtttctccctcaattgcacaatcaattgtctt-catggaaaatgcatgtgatgtt 13753  T
Q  159 tgaagtgatttaaatgagcatttcgcacaaagtgatttggtaagaatctttgaactgatgcnnnnnnnttattctttgcaacaagattctaaatatgtta 258  Q
    || ||||||||||| || | |||||||||| | ||||||||| |||| | |||| | ||||       |||  ||||||||||||||||||| | |||||    
T  13752 tggagtgatttaaaggaacgtttcgcacaaggcgatttggtatgaatatctgaattaatgcaagaaatttacactttgcaacaagattctaagtctgtta 13653  T
Q  259 catctttctactctgagttgaagattctgtgggagga 295  Q
    | ||||||||||| |||| |||||||  |||||||||    
T  13652 cttctttctactccgagtggaagatttcgtgggagga 13616  T

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Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 301
Target Start/End: Complemental strand, 31036901 - 31036650
Alignment:
Q  49 ctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgc 148  Q
    ||||| ||| |||||||||||| ||||||| ||| |||||||||| || |||||||  |||||||||||| ||||||| ||| | ||||||||| |||||    
T  31036901 ctttcatgcgtggaatcgctgtgatatgttagtttactcttggattgtgaattcagcctctccttcaattacacaatcaattgt-tttcatggaaaatgc 31036803  T
Q  149 atgtgatgtatgaagtgatttaaatgagcatttcgcacaaagtgatttggtaagaatctttgaactgatgcnnnnnnnttattctttgcaacaagattct 248  Q
    ||||||||| || | |||||| || |||| ||| |||||| || |||||||| |||| | ||||   ||||       ||| |||| | |||||||||||    
T  31036802 atgtgatgtttggaatgatttgaaggagcgttttgcacaaggtaatttggtacgaatttctgaataaatgctagaaatttactcttcgtaacaagattct 31036703  T
Q  249 aaatatgttacatctttctactctgagttgaagattctgtgggaggaatttga 301  Q
    || | |||||| |||||||||  ||||||||||||| ||||||||||| ||||    
T  31036702 aagtctgttacttctttctaccatgagttgaagattttgtgggaggaacttga 31036650  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2994761 - 2994890
Alignment:
Q  1 atttgttgatggaacgattcctctagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 100  Q
    ||||||||||||||| |||||||  || | |||||| || |||||    ||||||||||||||||| ||||||||| || ||||||| |||||| | |||    
T  2994761 atttgttgatggaactattcctccggttacagattcgtttgatccttcttttcgtgcttggaatcggtgtaatatgctgattcactcatggatcttgaat 2994860  T
Q  101 tcagtttctccttcaattgcacaatctatt 130  Q
    |||||   |||||||||| | |||||||||    
T  2994861 tcagtagatccttcaatttctcaatctatt 2994890  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 5560876 - 5561007
Alignment:
Q  1 atttgttgatggaacgattcctctagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 100  Q
    ||||||| ||||||| |||||| |||| | |||||| || ||||| |  ||||  ||||| ||||| || || ||| |  |||||||  ||||  |||||    
T  5560876 atttgttaatggaacaattcctttagtcacagattcctttgatcctacatttcaagcttgaaatcgttgcaacatgcttattcactcaaggattcttaat 5560975  T
Q  101 tcagtttctccttcaattgcacaatctattat 132  Q
    ||||||||||||||||||||| ||||||||||    
T  5560976 tcagtttctccttcaattgcataatctattat 5561007  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 25577751 - 25577645
Alignment:
Q  50 tttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgca 149  Q
    |||||| |||||||||| || || |  || |||||||| ||||| || ||||| || ||| ||||||||||||||||||| || ||||||||| |||||     
T  25577751 tttcgtccttggaatcgttgcaacaatttagttcactcatggattgtcaattctgtatcttcttcaattgcacaatctataat-tttcatggaaaatgcg 25577653  T
Q  150 tgtgatgt 157  Q
    ||||||||    
T  25577652 tgtgatgt 25577645  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33457898 - 33458026
Alignment:
Q  1 atttgttgatggaacgattcctctagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 100  Q
    ||||||||||||||| |||||||  || | |||||| || |||||    ||||||||||||||||| |||||||||||| ||||||| |||||| | |||    
T  33457898 atttgttgatggaactattcctccggttacagattcgtttgatccttcttttcgtgcttggaatcggtgtaatatgttgattcactcatggatcttgaat 33457997  T
Q  101 tcagtttctccttcaattgcacaatctat 129  Q
    |||||   |||||||||| | ||||||||    
T  33457998 tcagtagatccttcaatttctcaatctat 33458026  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 298
Target Start/End: Complemental strand, 25422874 - 25422627
Alignment:
Q  50 tttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgca 149  Q
    |||||||| |||||||| || || ||| |  ||||||||||  | || ||||| ||||| ||||||||||| ||||||||  | ||||||||| ||||||    
T  25422874 tttcgtgcctggaatcgttgcaacatgctttttcactcttgacttgtgaattcggtttcaccttcaattgctcaatctatcgt-tttcatggaaaatgca 25422776  T
Q  150 tgtgatgtatgaagtgatttaaatgagcatttcgcacaaagtgatttggtaagaatctttgaactgatgcnnnnnnnttattctttgcaacaagattcta 249  Q
    |||||||| ||    ||||| || || |  ||||||||| |||||||||||||||||| |||| ||||||       ||| ||||| ||||| ||||| |    
T  25422775 tgtgatgtttgggtggatttgaaggaacgattcgcacaaggtgatttggtaagaatctctgaattgatgcaagagatttactctttacaacacgattcca 25422676  T
Q  250 aatatgttacatctttctactctgagttgaagattctgtgggaggaatt 298  Q
    ||  ||||||| |  | || ||||| ||||||||||| ||||| |||||    
T  25422675 aaactgttacaacgatttattctgaattgaagattctttgggaagaatt 25422627  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 34822056 - 34822185
Alignment:
Q  1 atttgttgatggaacgattcctctagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 100  Q
    ||||||||||||||| ||| |||  || | |||||| || |||||    ||||||||||||||||| ||||||||| || ||||||| |||||| | |||    
T  34822056 atttgttgatggaactatttctccggttacagattcgtttgatccttcttttcgtgcttggaatcggtgtaatatgctgattcactcatggatcttgaat 34822155  T
Q  101 tcagtttctccttcaattgcacaatctatt 130  Q
    |||||   | |||||||| | |||||||||    
T  34822156 tcagtagattcttcaatttctcaatctatt 34822185  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 296
Target Start/End: Complemental strand, 19474543 - 19474328
Alignment:
Q  80 gttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgcatgtgatgtatgaagtgatttaaatgagcat 179  Q
    |||||||| |||||||| ||||| || |||||||||||||||||||| || ||  |||||||| || || |||||||| || | |||||| ||||| |      
T  19474543 gttcactcatggatcgtgaattctgtgtctccttcaattgcacaatccatcat-cttcatggaaaacgcctgtgatgtttggaatgatttgaatgaacgc 19474445  T
Q  180 ttcgcacaaagtgatttggtaagaatctttgaactgatgcnnnnnnnttattctttgcaacaagattctaaatatgttac-atctttctactctgagttg 278  Q
    ||  ||||  |||||||||||||||| | |||||| ||||       |||| | | |||||||||||| |||  | |||| |||||| ||||||||||||    
T  19474444 ttttcacatggtgatttggtaagaatttctgaactcatgcaagaaatttatgcatcgcaacaagattccaaaactattactatcttt-tactctgagttg 19474346  T
Q  279 aagattctgtgggaggaa 296  Q
    |||||| |||||||||||    
T  19474345 aagattttgtgggaggaa 19474328  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 37190335 - 37190464
Alignment:
Q  1 atttgttgatggaacgattcctctagtgaaagattcattcgatcccatctttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaat 100  Q
    ||||||||||||||| ||| |||  || | |||||| || |||||    ||||||||||||||||| ||||||||| || ||||||| |||||| | |||    
T  37190335 atttgttgatggaactatttctccggttacagattcgtttgatccttcttttcgtgcttggaatcggtgtaatatgctgattcactcatggatcttgaat 37190434  T
Q  101 tcagtttctccttcaattgcacaatctatt 130  Q
    |||||   | |||||||| | |||||||||    
T  37190435 tcagtagattcttcaatttctcaatctatt 37190464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 2181 - 2287
Alignment:
Q  50 tttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgca 149  Q
    |||||| |||||||||| || || |  || |||||||| ||||| || ||||| || ||| ||||||||||||||||||| || ||||||||| |||||     
T  2181 tttcgtccttggaatcgttgcaacaatttagttcactcatggattgtcaattctgtatcttcttcaattgcacaatctataat-tttcatggaaaatgcg 2279  T
Q  150 tgtgatgt 157  Q
    ||||||||    
T  2280 tgtgatgt 2287  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 219
Target Start/End: Complemental strand, 18503324 - 18503156
Alignment:
Q  50 tttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgca 149  Q
    |||||| |||||||||| || || |  || ||||| || ||||| || ||||| || ||| ||||||||||||||||||| || ||||||||| |||||     
T  18503324 tttcgtccttggaatcgttgcaacaatttagttcagtcatggattgtcaattctgtatcttcttcaattgcacaatctataat-tttcatggaaaatgcg 18503226  T
Q  150 tgtgatgtatgaagtgatttaaatgagcatttcgcacaaagtgatttggtaagaatctttgaactgatgc 219  Q
    |||||||| || | |||| |||| || |  ||  | ||| |||||||||||||||| | |||||| ||||    
T  18503225 tgtgatgtttggaatgatctaaaggaacgattttctcaaggtgatttggtaagaatttctgaacttatgc 18503156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 26363382 - 26363276
Alignment:
Q  50 tttcgtgcttggaatcgctgtaatatgttggttcactcttggatcgttaattcagtttctccttcaattgcacaatctattatatttcatggagaatgca 149  Q
    |||||| |||||||||| || || |  || |||||||| ||||| || |||||  | ||| ||||||||||||||||||| || ||||||||| |||||     
T  26363382 tttcgtccttggaatcgttgcaacaatttagttcactcatggattgtcaattctatatcttcttcaattgcacaatctataat-tttcatggaaaatgcg 26363284  T
Q  150 tgtgatgt 157  Q
    ||||||||    
T  26363283 tgtgatgt 26363276  T

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