View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_4 (Length: 628)
Name: NF9833_low_4
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 15 - 612
Target Start/End: Complemental strand, 38729065 - 38728469
Alignment:
| Q |
15 |
gtgtttggaaggttgcttatgagaataaacttttcccaaaggctatagttttcgatcagcacattgcttggtcccttgatgttagaaacttgtctgttgg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38729065 |
gtgtttggaaggttgcttatgagaataaacttttcccaaaggctatagttttcgatcagcacatagcttggtcccttgatgttagaaacttgtctgttgg |
38728966 |
T |
|
| Q |
115 |
agccacccttatagcagcggtgcacactcttcataggttcagaaagcgtatgctatattatggtattgtcccgagacggattaaattggtgacgggacca |
214 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38728965 |
agccgcccttatagctgcggtgcacactcttcataggttcagaaagcgcatgctgtattatggcattgtcccgagacggattaaattggtgacgggacca |
38728866 |
T |
|
| Q |
215 |
actttaaagattgtgattgcgcagatgttaagctcggtagagtctccatttgaggtgagtaaagttgttcttagagcaccaggagattctgtcatggagt |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| || || ||||||||||||||||||| |
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| T |
38728865 |
actttaaagattgtgattgcgcagatgttaagctcagtagagtctccgtttgaggtaagtaaagtggttcttagggcgccgggagattctgtcatggagt |
38728766 |
T |
|
| Q |
315 |
ggtttaagaaaccgatagttcaacagtttcttctgaatgaaattccatctagggctgatatcctgatgcacaagctgaacatacttttccccaattctgc |
414 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38728765 |
ggtttaagaaaccaatagttcagcagtttcttctgaatgaaattccatctagggctgatatcctgatgcacaagctgaacatacttttccccaattctgc |
38728666 |
T |
|
| Q |
415 |
acccgaaatcagatctctatcacctcctaaacctctaattgcgggaagggcaatgtaaacacagtcttaatatctaataggtgtttgaggtgcacactct |
514 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||| || |||| |
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| T |
38728665 |
acccgaaatcagatctctatcccctcctaaacctctaattgcaggcagggcaatgtaaacacaggcttaatatctaataggt-tttgaggtgtacgctct |
38728567 |
T |
|
| Q |
515 |
ttggatgtttaggaaggctatatcataatagatatgtactatttaagaatttggaataagatctttttagatttatattctttttcccacaaaagctg |
612 |
Q |
| |
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| |||||| |||| |||| ||||| ||||||||||| | |||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
38728566 |
tcatatgtttgggaaaattataccataacagatatgtactgtctaagaatttggaataaaatctttcaagatttatattctttttccctcaaaagctg |
38728469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 386477 - 386882
Alignment:
| Q |
15 |
gtgtttggaaggttgcttatgagaataaacttttcccaaaggctatagttttcgatcagcacattgcttggtcccttgatgttagaaacttgtctgttgg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386477 |
gtgtttggaaggttgcttatgagaataaacttttctcaaaggctatagttttcgatcagcacattgcttggtcccttgatgttagaaacttgtctgttgg |
386576 |
T |
|
| Q |
115 |
agccacccttatagcagcggtgcacactcttcataggttcagaaagcgtatgctatattatggtattgtcccgagacggattaaattggtgacgggacca |
214 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
386577 |
agccgcccttatagcagcggtgcacactcttcataggttcagaaagcgtatgctatattatggtattgtcccaagacggattaaattggtgacgggacca |
386676 |
T |
|
| Q |
215 |
actttaaagattgtgattgcgcagatgttaagctcggtagagtctccatttgaggtgagtaaagttgttcttagagcaccaggagattctgtcatggagt |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
386677 |
actttaaagattgtgattgtgcagatgttaggctcggtagagtctccatttgaggtgagtaaagttgttcttagagcaccaggagattctgtcatggagt |
386776 |
T |
|
| Q |
315 |
ggtttaagaaaccgatagttcaacagtttcttctgaatgaaattccatctagggctgatatcctgatgcacaagctgaacatacttttccccaattctgc |
414 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
386777 |
ggtttaagaaaccgatagttcagcagtttcttctgaatgaaattccatctagggctgatatcctgatgcacaagctgaacatactttttcccaattctgc |
386876 |
T |
|
| Q |
415 |
acccga |
420 |
Q |
| |
|
|||||| |
|
|
| T |
386877 |
acccga |
386882 |
T |
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