View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_40 (Length: 304)
Name: NF9833_low_40
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 302
Target Start/End: Complemental strand, 37215111 - 37214826
Alignment:
| Q |
16 |
agagccaaatcattgctttaaatannnnnnncttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccagccttttgattgca |
115 |
Q |
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| T |
37215111 |
agagccaaatcattgctttaaataattttttcttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccagccttttgattgca |
37215012 |
T |
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| Q |
116 |
gcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgttaatctatttaact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215011 |
gcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgttaatctatttaact |
37214912 |
T |
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| Q |
216 |
cagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctttgcttctcctcta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
37214911 |
cagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctccttggc-tctcctcta |
37214826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 23408274 - 23408205
Alignment:
| Q |
232 |
gggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctttgcttctcctcta |
302 |
Q |
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|||| |||||||| |||| ||||||| ||||||||||||||| |||| ||||||||| || ||||||||| |
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| T |
23408274 |
gggtgtctcaatttctaatgctttctgcggaccaccactcttgataatattgctccttggc-tctcctcta |
23408205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 52717148 - 52717091
Alignment:
| Q |
138 |
ttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtt |
195 |
Q |
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| T |
52717148 |
ttgcataatacaccctcccatacgacccttcaccaatcaatgcctttgatccaaagtt |
52717091 |
T |
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