View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_41 (Length: 301)
Name: NF9833_low_41
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38582230 - 38582518
Alignment:
| Q |
1 |
caacttgcaaagaccctatatattatattaaagctgcaattgcaatcggagaccgcagtttaaaactagacttgcatacatannnnnnnaagatatttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
38582230 |
caacttgcaaagaccctatatattatattaaagctgcaattgcaatcggagaccgcagtttaaaactagacttgcatacatatttttttacgatatttaa |
38582329 |
T |
|
| Q |
101 |
ccttatctttttatagcgttaaaagatagagttaaatatgtttcatttaattttgttatgtgttatnnnnnnnttaaacttctgcaagagagaattctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38582330 |
ccttatctttttatagcgttaaaagatagagttaaatatgtttcatttaattttgttatgtgttataaaaaaattaaacttctgcaagagagaattctat |
38582429 |
T |
|
| Q |
201 |
aatgtattaaacatgattgcag----nnnnnnnnttcaaaattttgaatgataaagttgacttaacaacaatgatcaaaggtgatgatg |
285 |
Q |
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| T |
38582430 |
aatgtattaaacatgattgcagaaaaaaataaaattcaaaattttgaatgaaaaagttgacttaacaacaatgatcaaaggtgatgatg |
38582518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 38617260 - 38616978
Alignment:
| Q |
1 |
caacttgcaaagaccctatatattatattaaagctgcaattgcaatcggagaccgcagtttaaaactagacttgcatacatannnnnnnaagatatttaa |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||| | |||||||| |
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| T |
38617260 |
caacttgcaaagaccctatatat---attaaagctgcaattgcaatcggaaatcgcagtttaaaactagatttgaatacatatttggttaccatatttaa |
38617164 |
T |
|
| Q |
101 |
cc----ttatctttttatagcgttaaaagatagagttaaatatgtttcatttaattttgttatgtgttatnnnnnnnttaaacttctgcaagagagaatt |
196 |
Q |
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|| |||||||||||||||||||||||| || |||||||||||||||||||| ||| || | |||||| |||||||| ||||||||| |||| |
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| T |
38617163 |
ccttaattatctttttatagcgttaaaagacagggttaaatatgtttcatttaa-tttattctttgttataaaaaatttaaacttttgcaagagaaaatt |
38617065 |
T |
|
| Q |
197 |
ctataatgtattaaacatgattgcagnnnnnnnnttcaaaattttgaatgataaagttgacttaacaacaatgatcaaaggtgatgat |
284 |
Q |
| |
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|||||||||||||| |||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
38617064 |
ctataatgtattaatcatgattgtag-aataaaattcaaaattttaaatgataacattgacttaacaacaatgatcaaaggtgatgat |
38616978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 32144433 - 32144469
Alignment:
| Q |
175 |
taaacttctgcaagagagaattctataatgtattaaa |
211 |
Q |
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| T |
32144433 |
taaacttttgcaagagagaattatataatgtattaaa |
32144469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 2433803 - 2433848
Alignment:
| Q |
174 |
ttaaacttctgcaagagagaattctataatgtattaaacatgattg |
219 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
2433803 |
ttaaacttttgcaagagagaaatctataatgtattaaacatgattg |
2433848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 2430172 - 2430211
Alignment:
| Q |
183 |
tgcaagagagaattctataatgtattaaacatgattgcag |
222 |
Q |
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| T |
2430172 |
tgcaagagagaattctataatgtattaatcatgactgcag |
2430211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 9271788 - 9271830
Alignment:
| Q |
174 |
ttaaacttctgcaagagagaattctataatgtattaaacatga |
216 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
9271788 |
ttaaacttttgcaaaagagaattctataacgtattaaacatga |
9271830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 29752459 - 29752503
Alignment:
| Q |
177 |
aacttctgcaagagagaattctataatgtattaaacatgattgca |
221 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
29752459 |
aacttttgcaagggagatttctataatgtattaaacatgattgca |
29752503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 41129049 - 41129002
Alignment:
| Q |
174 |
ttaaacttctgcaagagagaattctataatgtattaaacatgattgca |
221 |
Q |
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||||| || ||||||||||| |||||||||||||||||||||| |||| |
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| T |
41129049 |
ttaaatttttgcaagagagatttctataatgtattaaacatgactgca |
41129002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 4178299 - 4178253
Alignment:
| Q |
175 |
taaacttctgcaagagagaattctataatgtattaaacatgattgca |
221 |
Q |
| |
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||||||| |||||| ||||||||||||||||| ||||||| |||||| |
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| T |
4178299 |
taaacttttgcaagggagaattctataatgtactaaacattattgca |
4178253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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