View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_45 (Length: 277)
Name: NF9833_low_45
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 40277207 - 40277453
Alignment:
| Q |
17 |
aggatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatat |
116 |
Q |
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| T |
40277207 |
aggatgatgattgttctatgattggcttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatat |
40277306 |
T |
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| Q |
117 |
ttttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatgaagcc |
216 |
Q |
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| T |
40277307 |
ttttcatgaaattttatttgtcagtgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatattagatttgatgaagcc |
40277406 |
T |
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| Q |
217 |
gaaagagcaagactaatatcttccaccatagaaaatatggatcgtcc |
263 |
Q |
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| T |
40277407 |
gaaagagcaagactaatatcttccaccatagaaaatatggatcgtcc |
40277453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 61 - 266
Target Start/End: Original strand, 40376396 - 40376610
Alignment:
| Q |
61 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaata |
160 |
Q |
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| T |
40376396 |
tctggtaaaactacattggtgagagtaatgggtgagaaagtcatgtttttaaatatttttgatgagattttatttgtcaatgtgaccaaaaacccaaata |
40376495 |
T |
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| Q |
161 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttga---------tgaagccgaaagagcaagactaatatcttccaccatagaaaa |
251 |
Q |
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| T |
40376496 |
tcacagcaatgcaagatgaaattgctgactccttgaatataagatttgatagaaacagtgaagctgaaagagcaagaaaaatattatccacaatagaaaa |
40376595 |
T |
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| Q |
252 |
tatggatcgtcctat |
266 |
Q |
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| T |
40376596 |
tatggatcatcctat |
40376610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 40386599 - 40386790
Alignment:
| Q |
19 |
gatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatattt |
118 |
Q |
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| T |
40386599 |
gatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaatattt |
40386698 |
T |
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| Q |
119 |
ttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgat |
210 |
Q |
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| T |
40386699 |
ttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatttgat |
40386790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 40333321 - 40333508
Alignment:
| Q |
19 |
gatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatattt |
118 |
Q |
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| T |
40333321 |
gatgataattgttgtatgataggattgtacggtaggcgtgactctggtaaaactacgttggtgaaagtaatggaacagaaagtccaatatttgaatattt |
40333420 |
T |
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| Q |
119 |
ttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgactccttgaatataagatt |
206 |
Q |
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| T |
40333421 |
ttgatgagattttatttgtcaatgtgaccaaaaacccaaatatcacagcaatgcaagatgaaattgctgacttcttgaatataagatt |
40333508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 40598379 - 40598208
Alignment:
| Q |
19 |
gatgatgattgttctatgattgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatattt |
118 |
Q |
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|||||| |||| ||||||||||| |||||||||| |||| |||||||| ||||| |||| |||||||||||||||||||| ||| || |||| |||| |
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| T |
40598379 |
gatgataattgctctatgattggattgtatggtagcaagggctctggtaagacagcgttggcaaaagcaatgggtgagaaagttaagcatctaaagattt |
40598280 |
T |
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| Q |
119 |
ttcatgaaattttatttgtcagtgtgaccaaaatcccaaatatcacagcaatgcaagatgaaattgctgact |
190 |
Q |
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| T |
40598279 |
ttcatgaggttttatttgccacggtgacgcaaaacctgaatatcagaactatgcaagaagaaattgctgact |
40598208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 40257690 - 40257607
Alignment:
| Q |
37 |
attgggttgtatggtaagcagggatctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatattttt |
120 |
Q |
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| T |
40257690 |
attggattatatgggaagaagggctctggtaaaacaaagttggtgaaagcagttggtgagaaagccaagtatttaaagattttt |
40257607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 40325801 - 40325898
Alignment:
| Q |
61 |
tctggtaaaacagcattggtgaaagcaatgggtgagaaagtcaagtatttaaatatttttcatgaaattttatttgtcagtgtgaccaaaatcccaaa |
158 |
Q |
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| T |
40325801 |
tctggtaaaacaacattagtgaaagcagtggctgagaaagccaagtactccaagttttttgatgaagttttatttatcaatgtgtcccaaaacccaaa |
40325898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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