View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9833_low_5 (Length: 557)
Name: NF9833_low_5
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 47562027 - 47561727
Alignment:
| Q |
14 |
cagagagaacagaccactgcagactacagagtgcacagaaagacactgaagaaaaataggacaaatgccagcactgggaaaagcacagaatgagaaggaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47562027 |
cagagagaacagaccactgcagactacagagtgcacagaaagacactgaagaaaaataggacaaatgccagcactgggaaaagcacagaatgagaaggaa |
47561928 |
T |
|
| Q |
114 |
ggatatatggaattaatttattaaataataattactttatgcattattcatatcatatcatatgatatgacttcaattttttcaattatatatttactag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47561927 |
ggatatatggaattaatttattaaataataattactttatgcattattcatatc-----atatgatatgacttcaatttttttaattatatatttactag |
47561833 |
T |
|
| Q |
214 |
ttaccatatatatggcatgcaatgcatagtgataattgcatgaattggaaatttggtcccacgtaagctatcttccaaatcagcactggatgacatggcc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47561832 |
ttaccatatatatggcatgcaatgcatagtgataattgcatgaattggaaatttggtcccacgtaagctatcttccaaatcagcaatggatgacatggcc |
47561733 |
T |
|
| Q |
314 |
catacc |
319 |
Q |
| |
|
|||||| |
|
|
| T |
47561732 |
catacc |
47561727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 380 - 522
Target Start/End: Complemental strand, 47561686 - 47561544
Alignment:
| Q |
380 |
caaatcactcctcactgtcaattttgtatgcttgacaaagtcaggtgcacgagcacccaaggcatctaatgatatgtgatggtacggatattataccata |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47561686 |
caaatcactcctcactgtcaattttgtatgcttgacaaagtcaggtgcacgagcacccaaggcatctaatgatatgtgatggtacggatattataccata |
47561587 |
T |
|
| Q |
480 |
ccactatcgtatcaatcttaattttaacctttgccatcttctc |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47561586 |
ccactatcgtatcaatcttaattttaacctttgccatcttctc |
47561544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University