View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_55 (Length: 250)
Name: NF9833_low_55
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 33721193 - 33721332
Alignment:
| Q |
101 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggttannnnnnnngc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||| || |
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| T |
33721193 |
gccttgcatattctttccacatgtcctaactgacaacacttctgacattttacgtttggtctccaccaatatctgttttgtggatggttattttttttgc |
33721292 |
T |
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| Q |
201 |
agtatggacagggtgaaaagagacttgtattgcttctctg |
240 |
Q |
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| T |
33721293 |
agtatggacagggtgaaaagagacttgtattgcttctctg |
33721332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33721004 - 33721097
Alignment:
| Q |
1 |
attctgactttggaaatagttgtctccttcggatcattaaagagctcatgatcataagtcatgtggtttgtgcaaccaatatctataagccaac |
94 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33721004 |
attctgactttggaaatagttgtctcgtccggatcattaaagagctcatgatcataagtcatgtggtttgtgcaaccaatatctataagccaac |
33721097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 28698405 - 28698545
Alignment:
| Q |
101 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggtta-nnnnnnnng |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
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| T |
28698405 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacgtctggtctccaccaacatctgtttggtggatggttatttttttttg |
28698504 |
T |
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| Q |
200 |
cagtatggacagggtgaaaagagacttgtattgcttctctg |
240 |
Q |
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| T |
28698505 |
cagaatggacaaggtgaaaagagacttgtattgctgctctg |
28698545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 28698216 - 28698309
Alignment:
| Q |
1 |
attctgactttggaaatagttgtctccttcggatcattaaagagctcatgatcataagtcatgtggtttgtgcaaccaatatctataagccaac |
94 |
Q |
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||||||||||||||||||||||||| | | ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
28698216 |
attctgactttggaaatagttgtcttgtccaaatctttaaagagctcacgatcataagtcatgtggtttgtgcaaccactatctatgagccaac |
28698309 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 627184 - 627042
Alignment:
| Q |
101 |
gccttgcatattctttccacatgtcctaactgaccacacttgtgacattttacttttggtctccaccaatatctgtttggtggatggtta---nnnnnnn |
197 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
627184 |
gccttgcatattctttccacatgtcctaactggccacacttgtgacattttacgtctggtctccaccaacatctgtttggtggatggttatttttttttt |
627085 |
T |
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| Q |
198 |
ngcagtatggacagggtgaaaagagacttgtattgcttctctg |
240 |
Q |
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|||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
627084 |
tgcagtatggatagggtgaaaagagacttatattgctgctctg |
627042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 627373 - 627280
Alignment:
| Q |
1 |
attctgactttggaaatagttgtctccttcggatcattaaagagctcatgatcataagtcatgtggtttgtgcaaccaatatctataagccaac |
94 |
Q |
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||||||||| |||||||||||||||| | | ||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
627373 |
attctgactctggaaatagttgtctcgtccaaatctttatagagctcacgatcataagtcatgtggtttgtgcaaccactatctatgagccaac |
627280 |
T |
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