View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_56 (Length: 250)
Name: NF9833_low_56
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 19122720 - 19122596
Alignment:
| Q |
110 |
ttctaaaacggttgccacatgctttactccttatcggttgacttatggacatgacacaatattggcagtagaaatcgatgtgtcctcattaagggtagcc |
209 |
Q |
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| T |
19122720 |
ttctaaaacggttgccacatgatttactccttatcggttgacttatggacatgacacaatattggcagtagaaatcgatgtgtcctcattaagggtagcc |
19122621 |
T |
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| Q |
210 |
caacagaattaactcactcctgatg |
234 |
Q |
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| T |
19122620 |
caacagaattaaatcactcctgatg |
19122596 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19122792 - 19122707
Alignment:
| Q |
1 |
caagaagaatgtcaaagaccagtcaaacaagtgaaataaaacgttgaagaaggtgctttgggccgtgataaattctaaaacggttg |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19122792 |
caagaagaatgtcaaagaccagtcaaacaagtgaaataaaacattgaaggaggtgctttgggccgtgataaattctaaaacggttg |
19122707 |
T |
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