View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_59 (Length: 249)
Name: NF9833_low_59
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_59 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 25609826 - 25609924
Alignment:
| Q |
151 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaacatcaacagcctggtaataatttattcgtacttttgttt |
249 |
Q |
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| T |
25609826 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaacatcaacagcctggtaataatttattcgtacttttgttt |
25609924 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 25609735 - 25609797
Alignment:
| Q |
8 |
atggtgttgtgtcctattttaatgagttttttcttggttaagtttctgttcgcaccttcaaaa |
70 |
Q |
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| T |
25609735 |
atggtgttgtgttctattttaatgagttttttcttggttaagtttctgttcgcgccttcaaaa |
25609797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 25615527 - 25615588
Alignment:
| Q |
151 |
gatggattatgatcaccaagacaaaccatccttcttcgcaatcatcaaagaaggcttcaaca |
212 |
Q |
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| T |
25615527 |
gatggatcatgagcagcaagacaagccatcctttttcgctatcatcaaagaaggcttcaaca |
25615588 |
T |
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