View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_6 (Length: 515)
Name: NF9833_low_6
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Complemental strand, 34819913 - 34819429
Alignment:
| Q |
15 |
catcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaaggtcgagtgcgttcttgaggttgagatcg |
114 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34819913 |
catcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggccaacaagaagaatgtcgagtgcgttcttgaggttgagatcg |
34819814 |
T |
|
| Q |
115 |
gcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
34819813 |
gcggctccttgtggaacaggaacttcgatcgtgctggcttcgtgaaggatcatttcaacctttatgaagattttgaggcaacaaggaagtctaatcactc |
34819714 |
T |
|
| Q |
215 |
caatatgtttcatgatgctagtgtttcttggttgcgctctgtggcgttgcttgaagcgatggaggaaaagtttcaggctgtaaaatcgaatgcagatagg |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819713 |
caatatgtttcatgatgctagtgtttcttgtttgcgctctgtggtgttgcttgaagtgatggaggaaaagtttcaggctgtaaaatcgaatgcagatagg |
34819614 |
T |
|
| Q |
315 |
ctaaagcaggagaacgaagacttgaagttaagggttaaaaccttggaggaccagttgaaggaatctcgcaactccttaaagacgacaaaggatgagaaaa |
414 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819613 |
ctaaagcaggagaacgaagacttgaagttgagggttaaaaccttggaggaccagttgaaggaatctcgcaactccttaaagacgacaaaggatgagaaaa |
34819514 |
T |
|
| Q |
415 |
agaaagtcgaggaagataagcgagatgttgaagccaagtgcttggagcttaataacaatgatggtgccataaagggggaggttaa |
499 |
Q |
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| T |
34819513 |
agaaagtcgaggaagataagcgagatgttgaagccaagtgcttggagcttaataacaattatggtgccataaagggggaggttaa |
34819429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 34820189 - 34820119
Alignment:
| Q |
15 |
catcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
85 |
Q |
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||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| | | ||||||||| |
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| T |
34820189 |
catcaactcgctgaggcgtctcctttaaagaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 302
Target Start/End: Complemental strand, 22080743 - 22080589
Alignment:
| Q |
148 |
ctggcttcgtgaaggatcatttcaacctttatgaagattttgacgtaacaaggaagtctaatcactccaatatgtttcatgatgctagtgtttcttggtt |
247 |
Q |
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| T |
22080743 |
ctggcttcgtgaaagatcatttcaaccttcctgaggattttgaggcagcgaggaagtctaatcatttcagcttgtttcgagatgccattgtttcttgtct |
22080644 |
T |
|
| Q |
248 |
gcgctctgtggcgttgcttgaagcgatggaggaaaagtttcaggctgtaaaatcg |
302 |
Q |
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||| ||| | | ||||||||||| |||||||||| | ||| |||||||||||||| |
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| T |
22080643 |
gcgttctatagtgttgcttgaagtgatggaggaagatttttaggctgtaaaatcg |
22080589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 473
Target Start/End: Complemental strand, 22080561 - 22080435
Alignment:
| Q |
347 |
ggttaaaaccttggaggaccagttgaaggaatctcgcaactccttaaagacgacaaaggatgagaaaaagaaagtcgaggaagataagcgagatgttgaa |
446 |
Q |
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||||||| |||| ||||| |||||||||| ||| |||| ||||||||||| | | | ||||||| |||||||| |||| ||||||| |||| |||| |
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| T |
22080561 |
ggttaaatccttagaggattagttgaaggattctggcaattccttaaagacagcgaggtatgagaagaagaaagtttaggagaataagcgggatgctgaa |
22080462 |
T |
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| Q |
447 |
gccaagtgcttggagcttaataacaat |
473 |
Q |
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|| ||| || ||||||||||||||| |
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| T |
22080461 |
gctaagctgttagagcttaataacaat |
22080435 |
T |
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