View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_60 (Length: 248)
Name: NF9833_low_60
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 47512943 - 47513025
Alignment:
| Q |
157 |
cactcccagtccctgttagaatgttaaattaaaatccttataaattttacaagagggagtatttttactctgtatgacctatg |
239 |
Q |
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| T |
47512943 |
cactcccagtccctgttagaatgttaaattaaaatccttataaattttacaagagggagtatttttcctctgtatgacctatg |
47513025 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 47512788 - 47512837
Alignment:
| Q |
1 |
acatatataatgtttagctttagttttggatctgataacttttttacaag |
50 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47512788 |
acatatctaatgtttagctttagttttggatctgataacttttttacaag |
47512837 |
T |
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