View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_69 (Length: 237)
Name: NF9833_low_69
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6202915 - 6202691
Alignment:
| Q |
1 |
ttattatttaaaaaatacgttgaacacatgctataatctaattctttgatctatatctatccttttcaatgttgaaaacacaaattaaaaacacatgtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6202915 |
ttattatttaaaaaatacgttgaacacatgctataatctaattctttgatctatatctatccttttcaatgttgaaaacacaaattaaaaacacatgcta |
6202816 |
T |
|
| Q |
101 |
taattgttaattgtaagacagcagtacaaatctacaagacagctcaacttgaaccttggtgtctgtccctctcagccgtttccacgccgaaatttacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6202815 |
taattgttaattgtaagacagcagtacaaatctacaagacagctcaacttgaacctcggtgtctgtccctctcagccgtttccacgccgaaatttacatt |
6202716 |
T |
|
| Q |
201 |
ttcaccatttatatatacccacctt |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
6202715 |
ttcaccatttatatatacccacctt |
6202691 |
T |
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