View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_7 (Length: 493)
Name: NF9833_low_7
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 37215689 - 37215218
Alignment:
| Q |
18 |
ggcctcatagtcattgaataataagacattgctggatcgaacgtcacggtgaactatagaaggctgaaccttttcatgaagaaactctaatccttttgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215689 |
ggcctcatagtcattgaataataagacattgctggatcgaacgtcacggtgaactatagaaggctgaaccttttcatgaagaaactctaatccttttgct |
37215590 |
T |
|
| Q |
118 |
gcaccaaatgcaatttttgctctttggttccagcttaaaactggaccaggttcagcaccttgtacgcccttccttcctgcaaaagcgaaagccttggttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215589 |
gcaccaaatgcaatttttgctctttggttccagcttaaaactggaccaggttcagcaccttgtacgcccttccttcctgcaaaagcgaaagccttggttt |
37215490 |
T |
|
| Q |
218 |
taatcaaggaacatgaactatatccttaacaaaataaggttctagaaacatattctatttctattatttgaaattcaaatgcatcttactcaaatcatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37215489 |
taatcaaggaacatgaactatatccttaacaaaataaggttctagaaacatattctatttctattatttgaaattcaaatgcgtcttactcaaatcatgt |
37215390 |
T |
|
| Q |
318 |
gaatctcaca-aaatttgatataacctatatgaattttaactagtacaagagtgtgtgttgggaagagcatttctaaattaaatttatatggttataggc |
416 |
Q |
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| T |
37215389 |
ggatctcacataaatttgatataacctatatgaattttaactagtacaagagtgtgtgttgggaagagcatttctaaattaaatttatatggttataggc |
37215290 |
T |
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| Q |
417 |
ctaccatgtaatacatcatgcaaagaacccaaacttgcatattgataaaccaaaattctgttctctgcttct |
488 |
Q |
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| T |
37215289 |
ctaccgtgtaatacatcatgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtctgcttct |
37215218 |
T |
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Back To:
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Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 23408949 - 23408769
Alignment:
| Q |
19 |
gcctcatagtcattgaataataagacattgctggatcgaacgtcacggtgaactatagaaggctgaaccttttcatgaagaaactctaatccttttgctg |
118 |
Q |
| |
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|||||||| |||||||| | || |||||| |||||| ||| || | |||||||| ||||| ||||| || |||||||||||||| | ||||||||||| |
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| T |
23408949 |
gcctcataatcattgaacagcaaaacattggtggatctaacatctctatgaactattgaaggttgaactttctcatgaagaaactcaagtccttttgctg |
23408850 |
T |
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| Q |
119 |
caccaaatgcaatttttgctctttggttccagcttaaaactggaccaggttcagcaccttgtacgcccttccttcctgcaa |
199 |
Q |
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|||||||||||| |||| ||||||||||||| || |||| | |||||||||||| || || || || || |||||||||| |
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| T |
23408849 |
caccaaatgcaacttttactctttggttccaactcaaaattataccaggttcagccccctgaactccttttcttcctgcaa |
23408769 |
T |
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