View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_73 (Length: 229)

Name: NF9833_low_73
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_73
NF9833_low_73
[»] chr5 (3 HSPs)
chr5 (1-229)||(42874958-42875186)
chr5 (1-229)||(42884089-42884317)
chr5 (1-229)||(42890115-42890343)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 42874958 - 42875186
Alignment:
Q  1 tttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42874958 tttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaa 42875057  T
Q  101 tggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42875058 tggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaaga 42875157  T
Q  201 gtcctacatgaaattaacaaatcaagatc 229  Q
    |||||||||||||||||||||||||||||    
T  42875158 gtcctacatgaaattaacaaatcaagatc 42875186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 42884089 - 42884317
Alignment:
Q  1 tttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42884089 tttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaa 42884188  T
Q  101 tggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42884189 tggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaaga 42884288  T
Q  201 gtcctacatgaaattaacaaatcaagatc 229  Q
    |||||||||||||||||||||||||||||    
T  42884289 gtcctacatgaaattaacaaatcaagatc 42884317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42890343 - 42890115
Alignment:
Q  1 tttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42890343 tttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaa 42890244  T
Q  101 tggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42890243 tggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaaga 42890144  T
Q  201 gtcctacatgaaattaacaaatcaagatc 229  Q
    |||||||||||||||||||||||||||||    
T  42890143 gtcctacatgaaattaacaaatcaagatc 42890115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University