View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_75 (Length: 227)
Name: NF9833_low_75
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_75 |
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| [»] scaffold0288 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4661387 - 4661232
Alignment:
| Q |
1 |
aacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaag |
100 |
Q |
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| T |
4661387 |
aacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaag |
4661288 |
T |
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| Q |
101 |
agttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattt |
159 |
Q |
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| T |
4661287 |
agttttgttccgaatttgaaaaagactta---ttatgcattagttttataagtgcattt |
4661232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 4661093 - 4661008
Alignment:
| Q |
142 |
tgttttataagtgcatttatttatagaacaatgatactcannnnnnnagtgtttatatattttctctaacacagcccatagatttt |
227 |
Q |
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| T |
4661093 |
tgttttataagtgcatttatttatagaacaatgatactcatttttttagtgtttatatattttctctaacacagcccatagatttt |
4661008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 21557 - 21403
Alignment:
| Q |
1 |
aacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaag |
100 |
Q |
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| T |
21557 |
aacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcataccatgattgtaaatcaag |
21458 |
T |
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| Q |
101 |
agttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattt |
159 |
Q |
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| T |
21457 |
agttttgttccgaatttgaaa-agac---ttattatgcattagttttataagtgcattt |
21403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 21260 - 21175
Alignment:
| Q |
142 |
tgttttataagtgcatttatttatagaacaatgatactcannnnnnnagtgtttatatattttctctaacacagcccatagatttt |
227 |
Q |
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| T |
21260 |
tgttttataagtgcatttatttatagaacaatgatactcatttttttagtgtttatatattttctctaacacagcccatagatttt |
21175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49319321 - 49319402
Alignment:
| Q |
1 |
aacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcata |
82 |
Q |
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| T |
49319321 |
aacatcaattaagggtgctatgatatcaaacatggaatttgaagaagagtatgctctgatttcatacatgaaggggttcata |
49319402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 49324177 - 49324264
Alignment:
| Q |
95 |
atcaagagttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcat----ttatttatagaacaatgatactca |
181 |
Q |
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| T |
49324177 |
atcaagagttttgttccgaatcggaaagacacttattat---gtatttgttttataagtgcatttaattatttatagaacaatgatactca |
49324264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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