View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_76 (Length: 223)
Name: NF9833_low_76
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_76 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42875453 - 42875231
Alignment:
| Q |
1 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtcttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875453 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtcttgt |
42875354 |
T |
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| Q |
101 |
cactagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaagtaaat |
200 |
Q |
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| T |
42875353 |
cactagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaagtaaat |
42875254 |
T |
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| Q |
201 |
ttttattcatatcaatattacat |
223 |
Q |
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||| ||||||||||||||||||| |
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| T |
42875253 |
tttaattcatatcaatattacat |
42875231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42884584 - 42884362
Alignment:
| Q |
1 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtcttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884584 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtcttgt |
42884485 |
T |
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| Q |
101 |
cactagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaagtaaat |
200 |
Q |
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| T |
42884484 |
cactagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaagtaaat |
42884385 |
T |
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| Q |
201 |
ttttattcatatcaatattacat |
223 |
Q |
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| T |
42884384 |
tttaattcatatcaatattacat |
42884362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42889848 - 42890070
Alignment:
| Q |
1 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtcttgt |
100 |
Q |
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| T |
42889848 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtcttgt |
42889947 |
T |
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| Q |
101 |
cactagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaagtaaat |
200 |
Q |
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| T |
42889948 |
cactagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaagtaaat |
42890047 |
T |
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| Q |
201 |
ttttattcatatcaatattacat |
223 |
Q |
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||| ||||||||||||||||||| |
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| T |
42890048 |
tttaattcatatcaatattacat |
42890070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 37505640 - 37505451
Alignment:
| Q |
1 |
ccatcaaacaaggttatagacactttgatactgctgctgcatatggctcagaacaagctcttggtgaagctttgaaagaagcaattgaacttggtct--t |
98 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||| ||| || || |||| |||||| | ||||||| || ||||||| || | |
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| T |
37505640 |
ccatcaaacaaggttatagacattttgatgctgctgctgcatatggtgtggaaaaatctgttggagaagctattgcagaagcacttaaacttggacttat |
37505541 |
T |
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| Q |
99 |
gtca-ctagacaagacctttttgttacttctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctct |
187 |
Q |
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| T |
37505540 |
ttcatctagagatgaactctttgttacttctaaattatgggttactgataatcatcctgagctcattgttcctgctctgcagaaatctct |
37505451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 13216 - 13285
Alignment:
| Q |
126 |
tctaaactttgggttactgaaaatcatcctcatcttgttattcctgctcttcaaaaatctctcaagtaag |
195 |
Q |
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| T |
13216 |
tctaaactttgggttactgataattttcctcatcttgttcttcctgctcttcagaaatcactccagtaag |
13285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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