View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_8 (Length: 487)
Name: NF9833_low_8
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 185 - 467
Target Start/End: Complemental strand, 4935837 - 4935554
Alignment:
| Q |
185 |
caaaattgtcactcttcatgttttccaaattgtgtaatcaaaacataacaatcaaaatttgttctcactgtttcttaatgaaactttgtacagaaacatt |
284 |
Q |
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| T |
4935837 |
caaaattgtcactcttcatgttttccaaattgtgtaatcaaaacataacaatcaaaatttgttctcactgtttctatatgaaactttgtacagaaacatt |
4935738 |
T |
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| Q |
285 |
gaaaacagaaggnnnnnnnnn-gtgcaaacatattataggtcctgagatttcagaagaccctgcagggaatatacctttgttttacttcggcaatcacgt |
383 |
Q |
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| T |
4935737 |
gaaaacagaaggataaaaaaaagtgcaaacatattataggtcctgagatttcagaagaccctgcagggaatatacctttgttttacttcggcaatcacgt |
4935638 |
T |
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| Q |
384 |
gcaacttgagacggtctttgatggatagaagaactaaaacattgaattaggcatggtgatgttatatgaactgctggattctgc |
467 |
Q |
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| T |
4935637 |
gcaacttgagacggtctctgatggatagaagaactaaaacattgaattaggcatggtgatgttatatgaattgttggattctgc |
4935554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 185 - 469
Target Start/End: Complemental strand, 4951527 - 4951243
Alignment:
| Q |
185 |
caaaattgtcactcttcatgttttccaaattgtgtaatcaaaacataacaatcaaaatttgttctcactgtttcttaatgaaactttgtacagaaacatt |
284 |
Q |
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| T |
4951527 |
caaaattgtcactcttcatgttttccaaattgtgtaatcaaaacataacaatcaaaatttgttctcactgtttctatatgaaactttgtacagaaacatt |
4951428 |
T |
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| Q |
285 |
gaaaacagaaggnnnnnnnnngtgcaaacatattataggtcctgagatttcagaagaccctgcagggaatatacctttgttttacttcggcaatcacgtg |
384 |
Q |
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| T |
4951427 |
gaaaacagaaggaaaaaaaaagtgcaaacatattataggttctgagatttcaggagaccctaccgggaatatacctttgttttacttcggcaatcacatg |
4951328 |
T |
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| Q |
385 |
caacttgagacggtctttgatggatagaagaactaaaacattgaattaggcatggtgatgttatatgaactgctggattctgcac |
469 |
Q |
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| T |
4951327 |
caacttgagacggtctctgatggatagaagaactaaaacattgaattaggcatggtgatgttatatgaattgctgcattctgcac |
4951243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 4935990 - 4935907
Alignment:
| Q |
11 |
cacagaaccaaacatactaaatgacccaatgaacaaatttctctgaaatcagggttggtacttggtgtaacaaagaaccctatt |
94 |
Q |
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| T |
4935990 |
cacaaaaccaaacatactaaatgacccaatgaacaaatttctctgaaatcagggttggtacttggtgtaccaaagaatcctatt |
4935907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 4951690 - 4951622
Alignment:
| Q |
11 |
cacagaaccaaacatactaaatgacccaatgaacaaatttctctgaaatcagggttggtacttggtgta |
79 |
Q |
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| T |
4951690 |
cacagaacaaaacatactaaatgacccaatgaacaaatttctttaaaatcagggttggtacttggtgta |
4951622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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