View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_80 (Length: 217)

Name: NF9833_low_80
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_80
NF9833_low_80
[»] chr5 (14 HSPs)
chr5 (19-206)||(37428837-37429024)
chr5 (23-99)||(37400750-37400826)
chr5 (23-183)||(37640000-37640160)
chr5 (19-92)||(37413124-37413197)
chr5 (19-99)||(37594536-37594616)
chr5 (23-178)||(37435840-37435995)
chr5 (19-183)||(37702796-37702960)
chr5 (23-99)||(37711836-37711912)
chr5 (19-99)||(37392760-37392840)
chr5 (23-99)||(37696933-37697009)
chr5 (23-99)||(37824107-37824183)
chr5 (28-109)||(37382212-37382293)
chr5 (23-99)||(37533312-37533388)
chr5 (147-183)||(37594452-37594488)
[»] chr3 (1 HSPs)
chr3 (23-183)||(14553238-14553398)
[»] chr4 (1 HSPs)
chr4 (28-99)||(16842753-16842824)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 37429024 - 37428837
Alignment:
Q  19 acatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429024 acatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttt 37428925  T
Q  119 tctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgacttcatctcac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37428924 tctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttgacagtaatattgactccatctcac 37428837  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 37400750 - 37400826
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  37400750 ggtcattttccaaattcaatatttgaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgt 37400826  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 37640160 - 37640000
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttcta 122  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||| ||||| || || ||| || | ||||| |    
T  37640160 ggtcattttccaaattcaatatttcaactccaaaatcttacttacttagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaa 37640061  T
Q  123 agtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 183  Q
    | || ||   ||| | || ||| |||||||| || ||||| ||||||||||||||| ||||    
T  37640060 aattaaacaaactaagttcccttgatctttcccataatagttttctttctatcaacattga 37640000  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 37413124 - 37413197
Alignment:
Q  19 acatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttga 92  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||    
T  37413124 acatggtcattttccaaattcaatatttaaattccaaaatcttacttacttaggtttgtcatcaacaaacttga 37413197  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 37594616 - 37594536
Alignment:
Q  19 acatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||||||| ||||||||||||||||||| || ||||||||||  |||||||| |||||||||||||||||||||| |||||    
T  37594616 acatggtcattttccaaattcaatatttcaactccaaaatctatcttacttaactttgtcatcaaccaacttgagtggtgt 37594536  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 37435995 - 37435840
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttcta 122  Q
    |||| |||| |||||||||||||| || |||||||||||||| | |||| |||||||||||| |||||||| ||||| || || ||| || | ||||| |    
T  37435995 ggtcatttttcaaattcaatatttcaactccaaaatcttactgaattagatttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaa 37435896  T
Q  123 agtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaac 178  Q
    |  |||||   || | | ||||| |||||||||||||||| |||||||||||||||    
T  37435895 aacttaaaaatctaattctcctcaatctttcgcacaatagttttctttctatcaac 37435840  T

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Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 37702960 - 37702796
Alignment:
Q  19 acatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttt 118  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||  |||||| |||||| ||||| |||||||| ||||| || || ||| || | |||    
T  37702960 acatggtcattttccaaattcaatatatgaactccaaaatcttaccaacttagatttgtcgtcaacaaacttgagtggtgtcgtggattttcaccaattt 37702861  T
Q  119 tctaagtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 183  Q
    || || || |||  ||| | || ||||  |||||| |||||||| ||| ||||||||||| ||||    
T  37702860 tcaaaattaaaaaaactaaattccctcattctttcacacaatagttttatttctatcaacattga 37702796  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37711912 - 37711836
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||  |||||||||||| |||||||| |||||    
T  37711912 ggtcattttccaaattcaatatttcaactccaaaatcttacttacttatatttgtcatcaacaaacttgagtggtgt 37711836  T

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Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 37392760 - 37392840
Alignment:
Q  19 acatggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||||||| |||||||||||||||||||||| |||||||||||||  |||||| |||||| ||||| ||||| || |||||    
T  37392760 acatggtcattttccaaattcaatatttgaactccaaaatcttaccaacttagatttgtcttcaacaaacttaagtggtgt 37392840  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37697009 - 37696933
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||| ||||||||||||||||||| || ||||||| |||||  | |||  ||||||||||||||||||||| |||||    
T  37697009 ggtcattttccaaattcaatatttcaactccaaaaccttaccgagttatatttgtcatcaaccaacttgagtggtgt 37696933  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37824183 - 37824107
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||| ||||||||||||||||||| || |||||||||||||  | |||  |||||||||||| |||||||| |||||    
T  37824183 ggtcattttccaaattcaatatttcaactccaaaatcttaccgagttaattttgtcatcaacaaacttgagtggtgt 37824107  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 37382212 - 37382293
Alignment:
Q  28 ttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttt 109  Q
    ||||||||||||||||| | || | |||||||||  | ||||||  |||||||||||||||||||| ||||| || ||||||    
T  37382212 ttttccaaattcaatatataaattacaaaatctttttgacttaggattgtcatcaaccaacttgagtggtgttgtggacttt 37382293  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 37533388 - 37533312
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||| ||||||||||||||||||| || |||||||||||||  |||||  ||||||||| || ||||| || |||||    
T  37533388 ggtcattttccaaattcaatatttcaactccaaaatcttaccgacttatatttgtcatccacaaacttaagtggtgt 37533312  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 37594488 - 37594452
Alignment:
Q  147 atctttcgcacaatagctttctttctatcaactttga 183  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  37594488 atctttcacacaatagttttctttctatcaactttga 37594452  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 183
Target Start/End: Complemental strand, 14553398 - 14553238
Alignment:
Q  23 ggtccttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgtagtagacttttacaatttttcta 122  Q
    |||| |||||||||||||||||||||| |||||||||||||  |||||  ||||||||| || |||||||| ||||| || || ||| || | ||||| |    
T  14553398 ggtcattttccaaattcaatatttgaactccaaaatcttaccgacttatatttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaa 14553299  T
Q  123 agtttaaattacttactttcctcgatctttcgcacaatagctttctttctatcaactttga 183  Q
    | || |||  ||| | || |||||||||||| |||||||| ||| ||||||||||| ||||    
T  14553298 aattaaaaaaactaaattccctcgatctttcacacaatagttttatttctatcaacattga 14553238  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 16842753 - 16842824
Alignment:
Q  28 ttttccaaattcaatatttgaaatccaaaatcttacttacttagctttgtcatcaaccaacttgagaggtgt 99  Q
    |||||||||||||||||||||| |||||||||||||   | ||| ||| |||||||| |||||||| |||||    
T  16842753 ttttccaaattcaatatttgaactccaaaatcttaccgccctagatttatcatcaacaaacttgagtggtgt 16842824  T

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