View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9833_low_81 (Length: 212)

Name: NF9833_low_81
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9833_low_81
NF9833_low_81
[»] chr1 (11 HSPs)
chr1 (18-200)||(14504362-14504544)
chr1 (18-200)||(14468183-14468365)
chr1 (18-200)||(14483131-14483313)
chr1 (18-192)||(14522174-14522348)
chr1 (18-194)||(14532295-14532471)
chr1 (18-177)||(15017518-15017677)
chr1 (18-177)||(15037422-15037581)
chr1 (18-177)||(15002510-15002669)
chr1 (18-177)||(15011403-15011562)
chr1 (18-177)||(15032855-15033014)
chr1 (18-91)||(15041076-15041149)
[»] scaffold0400 (2 HSPs)
scaffold0400 (18-193)||(13175-13350)
scaffold0400 (18-179)||(6889-7050)
[»] scaffold0365 (2 HSPs)
scaffold0365 (18-193)||(13818-13993)
scaffold0365 (18-179)||(7533-7694)
[»] chr8 (2 HSPs)
chr8 (18-179)||(17027290-17027451)
chr8 (18-179)||(17557782-17557943)
[»] chr7 (10 HSPs)
chr7 (52-175)||(17848933-17849056)
chr7 (49-175)||(17825679-17825805)
chr7 (44-176)||(16103293-16103425)
chr7 (37-175)||(15664811-15664949)
chr7 (19-163)||(14606321-14606465)
chr7 (19-163)||(16025498-16025642)
chr7 (44-175)||(15676652-15676783)
chr7 (46-163)||(16172974-16173091)
chr7 (18-150)||(31103055-31103187)
chr7 (46-170)||(31058591-31058715)
[»] scaffold0289 (3 HSPs)
scaffold0289 (43-175)||(5143-5275)
scaffold0289 (43-175)||(13976-14108)
scaffold0289 (130-175)||(17772-17817)
[»] chr5 (1 HSPs)
chr5 (93-167)||(37027180-37027254)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 14504544 - 14504362
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14504544 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgttgtcaaactcttctgtggct 14504445  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaacctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14504444 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaacctt 14504362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 14468365 - 14468183
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  14468365 cttcacagctacaacttgacctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagatgcttgttgtcaaactcttctgtggct 14468266  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaacctt 200  Q
    || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14468265 tcaacaatgttttcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaacctt 14468183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 14483313 - 14483131
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |||| |||||||    
T  14483313 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttttgtggct 14483214  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaacctt 200  Q
    || | ||| || || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14483213 tcgataatgttctcgtacaccatttttcaatcaaaactccatattgaaaatagattttcagggtgtgattcttctgcaacctt 14483131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 14522174 - 14522348
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||||||||| || || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |||||| ||||||||||||    
T  14522174 cttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggct 14522273  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttct 192  Q
    || |  ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| ||  ||||||||    
T  14522274 tcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttct 14522348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 14532295 - 14532471
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||| ||||||||||||    
T  14532295 cttcacagcaacaacttgacctgtaggcaactctgctttgtaaacacttccatgccctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 14532394  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgc 194  Q
    || | |||  | || |||||||||||||||||||| |||||||||| ||||||||||||||| ||  ||||||||||    
T  14532395 tcgataatggtctcgtacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgc 14532471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 15017677 - 15017518
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| ||||||    
T  15017677 cttcacagctacaacttgacctgaaggcaactctgctttgtaaacacttgcatgtcctccaaccccaatgagatgtttgttgtcaaaatcttccgtggct 15017578  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttca 177  Q
    || |  || || |||||||||||||| |||||||| |||||||||  |||||||||||||    
T  15017577 tcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttca 15017518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 15037581 - 15037422
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||| ||||||    
T  15037581 cttcacagctacaacttgacctgtgggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttcagtggct 15037482  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttca 177  Q
    || | ||| || |||||||||||||| |||||||| |||||||||  |||||||||||||    
T  15037481 tcgataatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttca 15037422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 15002669 - 15002510
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  15002669 cttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 15002570  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttca 177  Q
    || |  || || || |||||||||||||||||||| |||||||||  |||||||||||||    
T  15002569 tcgattatgttctcgtacaccatttttccatcaaagctccatatttcaaatagattttca 15002510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 15011562 - 15011403
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  15011562 cttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 15011463  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttca 177  Q
    || |  || || |||||||||||||| |||||||| |||||||||  |||||||||||||    
T  15011462 tcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttca 15011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 15033014 - 15032855
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||    
T  15033014 cttcacagctacaacttgacctgtgggcaactctgctttgtaaacacttccatgtcctccaaccccaaggagatgcttgtcgtcaaaatcttcagtggct 15032915  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttca 177  Q
    || |  || || || ||||||||||| |||||||| |||||||||  ||| |||||||||    
T  15032914 tcgattatgttctcgtacaccattttgccatcaaagctccatatttcaaacagattttca 15032855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 15041149 - 15041076
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagat 91  Q
    |||||||||||| || || || ||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  15041149 cttcacagctaccacttgaccagtaggcaactctgctttgtaatcacttccatgtactccaaccccaatgagat 15041076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 13350 - 13175
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  13350 cttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 13251  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctg 193  Q
    || |  || || ||||| ||||||||||||||||| |||||| ||| ||| ||||||||||| ||  |||||||||    
T  13250 tcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctg 13175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 7050 - 6889
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||| | ||| |||||||| |||| |||||||||||| || |||    
T  7050 cttcaccgctacaacttgtcctgtggggaactctgctttgtaaacacttccgtgtcctcctatcccaatgagatgcttgttgtcaaactcttcagttgct 6951  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagt 179  Q
    || ||||| || |||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  6950 tcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagt 6889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 13993 - 13818
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||||||||||||    
T  13993 cttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctgtggct 13894  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctg 193  Q
    || |  || || ||||| ||||||||||||||||| |||||| ||| ||| ||||||||||| ||  |||||||||    
T  13893 tcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctg 13818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 7694 - 7533
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||| |||||||| | ||| |||||||| |||| |||||||||||| || |||    
T  7694 cttcaccgctacaacttgtcctgtggggaactctgctttgtaaacacttccgtgtcctcctatcccaatgagatgcttgttgtcaaactcttcagttgct 7595  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagt 179  Q
    || ||||| || |||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  7594 tcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagt 7533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 17027451 - 17027290
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||  |||| |||||||||||| ||||||    
T  17027451 cttcacagctacaacttgtccaataggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgttgtcaaactcttcggtggct 17027352  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagt 179  Q
    || | ||| || ||||||||||||||||||||||| ||||||| || ||||||||| |||||    
T  17027351 tcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagt 17027290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 17557943 - 17557782
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||||||||| |||||  ||||||||||||||| ||||||||||||||| ||||||||||| |||||||  |||| |||||||||||| ||||||    
T  17557943 cttcacagctacaacttgtccaataggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgttgtcaaactcttcggtggct 17557844  T
Q  118 tctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagt 179  Q
    || | ||| || ||||||||||||||||||||||| ||||||| || ||||||||| |||||    
T  17557843 tcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagt 17557782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 17849056 - 17848933
Alignment:
Q  52 gctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttccatcaa 151  Q
    ||||||||||||||||| || ||||| || |||||||||||||| || ||||| |||||||||||||| | |||| | ||||||||||||||||||||||    
T  17849056 gctttgtaaacacttccctgccctcctactccgatgagatgtttatcatcaaaatcttctgtggcttcaataatactctcatacaccatttttccatcaa 17848957  T
Q  152 aactccatattgaaaatagatttt 175  Q
    |||||||||| | |||||||||||    
T  17848956 aactccatatggtaaatagatttt 17848933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 17825679 - 17825805
Alignment:
Q  49 tctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttccat 148  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| || ||||||||||  | |||||| ||||||||||||||  |||    
T  17825679 tctgctttgtaaacacttccatgccctccaactccgatgagatgtttatcatcaaaatcgtctgtggcttgaataatattctcatacaccattttgtcat 17825778  T
Q  149 caaaactccatattgaaaatagatttt 175  Q
    ||||||||||||| | |||||||||||    
T  17825779 caaaactccatatggtaaatagatttt 17825805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 16103425 - 16103293
Alignment:
Q  44 gcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttt 143  Q
    |||||| ||||||||| ||||||||||| || ||||| || || |||||||| || ||||| |||||||||||||| ||||| |||||| |||| |||||    
T  16103425 gcaactttgctttgtagacacttccatgccccccaacaccaattagatgtttctcatcaaaatcttctgtggcttccacaatgttttcaaacacaatttt 16103326  T
Q  144 tccatcaaaactccatattgaaaatagattttc 176  Q
    |||||||||  ||||||||| ||||| ||||||    
T  16103325 tccatcaaagttccatattgtaaatacattttc 16103293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 15664811 - 15664949
Alignment:
Q  37 cctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcataca 136  Q
    ||||| ||||||| |||||||||||||||||| ||  ||||  | || |||||||| ||||| ||||||||||| || ||||| | ||| || |||||||    
T  15664811 cctgtgggcaactttgctttgtaaacacttccttgcgctcctgctccaatgagatgcttgtcatcaaactcttccgttgcttcaataatgttctcataca 15664910  T
Q  137 ccatttttccatcaaaactccatattgaaaatagatttt 175  Q
    ||||||| ||||||||||||||||||| ||||| |||||    
T  15664911 ccattttcccatcaaaactccatattgtaaatacatttt 15664949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 14606465 - 14606321
Alignment:
Q  19 ttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggctt 118  Q
    |||||||| || || || |||||  |||||| ||||||||| ||||||||||| |||||||| || ||||||||||| || ||||| |||||||||||||    
T  14606465 ttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgagatgtttttcatcaaaatcttctgtggctt 14606366  T
Q  119 ctacaatattttcatacaccatttttccatcaaaactccatattg 163  Q
    | | ||| || |||||||  | ||||||||||||  |||||||||    
T  14606365 ccaaaatgttctcatacaaaaattttccatcaaagttccatattg 14606321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 16025642 - 16025498
Alignment:
Q  19 ttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggctt 118  Q
    |||||||| || || || |||||  |||||| ||||||||| ||||||||||| |||||||| || ||||||||||| || ||||| |||||||||||||    
T  16025642 ttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgagatgtttttcatcaaaatcttctgtggctt 16025543  T
Q  119 ctacaatattttcatacaccatttttccatcaaaactccatattg 163  Q
    | | ||| || |||||||  | ||||||||||||  |||||||||    
T  16025542 ccaaaatgttctcatacaaaaattttccatcaaagttccatattg 16025498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 15676652 - 15676783
Alignment:
Q  44 gcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttt 143  Q
    |||| ||||||||||||||  |||| ||  |||| || || |||||||| ||||| |||||||||| ||||||||| |  || || ||||||||||||||    
T  15676652 gcaaatctgctttgtaaacttttccttgcgctcctactccaatgagatgcttgtcatcaaactcttatgtggcttcaattatgttctcatacaccatttt 15676751  T
Q  144 tccatcaaaactccatattgaaaatagatttt 175  Q
     ||||||||||||||||||| ||||| |||||    
T  15676752 cccatcaaaactccatattgtaaatacatttt 15676783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 16173091 - 16172974
Alignment:
Q  46 aactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttc 145  Q
    ||||||||||||||||||||||| || |||||||| || || |||| |||||| ||||| |||| ||||||||| |  || || || || ||||||||||    
T  16173091 aactctgctttgtaaacacttccttgccctccaactccaataagatatttgtcatcaaaatcttgtgtggcttccaagatgttctcgtagaccatttttc 16172992  T
Q  146 catcaaaactccatattg 163  Q
    |||| ||| |||||||||    
T  16172991 catcgaaattccatattg 16172974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 31103187 - 31103055
Alignment:
Q  18 cttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggct 117  Q
    ||||||||| ||||||  |||||||||||||||||| ||||||||| |||| || | |||||| || ||||||| |||||| ||||| |  || || |||    
T  31103187 cttcacagcaacaaccaatcctgtaggcaactctgccttgtaaacatttccttgacttccaactccaatgagatatttgtcatcaaaattctcagtagct 31103088  T
Q  118 tctacaatattttcatacaccatttttccatca 150  Q
    || |  ||||||||| ||| |||||| ||||||    
T  31103087 tcaatgatattttcaaacatcattttcccatca 31103055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 31058715 - 31058591
Alignment:
Q  46 aactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttc 145  Q
    |||||||| ||||||||| |||| || | ||| || || | ||||| |||||| ||||| | | | || ||||| | |||||||||| ||| ||||||||    
T  31058715 aactctgccttgtaaacatttccttgacttccgactccaacgagatatttgtcatcaaaatttgcagtagcttcaataatattttcaaacatcatttttc 31058616  T
Q  146 catcaaaactccatattgaaaatag 170  Q
    |||||  |||||| || ||||||||    
T  31058615 catcatgactccaaatggaaaatag 31058591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 5143 - 5275
Alignment:
Q  43 ggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccattt 142  Q
    |||||||||||||||||||||||||| ||  |||| |  || |||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||||    
T  5143 ggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattt 5242  T
Q  143 ttccatcaaaactccatattgaaaatagatttt 175  Q
    | ||||||||||||||||| | ||||| |||||    
T  5243 tcccatcaaaactccatatagtaaatacatttt 5275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 13976 - 14108
Alignment:
Q  43 ggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgtcgtcaaactcttctgtggcttctacaatattttcatacaccattt 142  Q
    |||||||||||||||||||||||||| ||  |||| |  || |||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||||    
T  13976 ggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctgtggcttcaataatgttctcatacaccattt 14075  T
Q  143 ttccatcaaaactccatattgaaaatagatttt 175  Q
    | ||||||||||||||||| | ||||| |||||    
T  14076 tcccatcaaaactccatatagtaaatacatttt 14108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 17772 - 17817
Alignment:
Q  130 tcatacaccatttttccatcaaaactccatattgaaaatagatttt 175  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||    
T  17772 tcatacaccattttcccatcaaaactccatattgtaaatacatttt 17817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 37027254 - 37027180
Alignment:
Q  93 tttgtcgtcaaactcttctgtggcttctacaatattttcatacaccatttttccatcaaaactccatattgaaaa 167  Q
    |||||| ||||| || ||||||||||| |  ||||||||||| ||||||||||||||| |||||||||| |||||    
T  37027254 tttgtcatcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatatggaaaa 37027180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University