View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9833_low_9 (Length: 467)
Name: NF9833_low_9
Description: NF9833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9833_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 3503126 - 3503574
Alignment:
| Q |
1 |
ctgctgattctgcgagtttcaagcttgcttgctcacacatccccacaagggatccttggtttttcatggttgctcccgatctcaaccaatctgtaatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3503126 |
ctgctgattctgcgagtttcaagcttgcttgctcacacatccccacaagggatccttggtttttcatggttgctcccgatctcaaccaatctgtaatttt |
3503225 |
T |
|
| Q |
101 |
cgactcggctgaaaacagttggaaaagactcaatcatccgaatcttctgctcgaagattccaacaaaagttgcattcctgttgcagcttctaatggcctg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3503226 |
tgacttggctgaaaacagttggaaaagactcaatcatccgaatcttctgctcgaagattccaacaaaagttgcattcctgttgcagcttctaatggcctg |
3503325 |
T |
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| Q |
201 |
gtttgctaccgaacatcgtcgggaaacttcattgtgtccaatcctgtgaccggatcttctaccgaactccctccattgaatttcacctcagaaaatcaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3503326 |
gtttgctaccgaacatcgtcgggaaacttcattgtgtccaatcctgtgaccggatcttctaccgaactccctccattgaatttcacctcagaaaatcaat |
3503425 |
T |
|
| Q |
301 |
ctctcaatgctgttgttatgagtacaacatctttcaatggccaaatatcctacaagattgtattagtcttcggtgaacttcccaatctttcatttaaagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3503426 |
ctctcaatgctgttgttatgagtacaacatctttcaatggccaaatatcctacaagattgtattagtcttcggtgaacttcccaatctttcatttaaagt |
3503525 |
T |
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| Q |
401 |
ctataactcaagctctacctgttgggaagacgagaatgctcttgggagg |
449 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3503526 |
ctataactcaagctctgcctgttgggaagacgagaatgctcttgggagg |
3503574 |
T |
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