View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9834_low_1 (Length: 435)
Name: NF9834_low_1
Description: NF9834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9834_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 6 - 422
Target Start/End: Original strand, 41556675 - 41557091
Alignment:
| Q |
6 |
actttgtttctcaatccaatccaaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttct |
105 |
Q |
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| T |
41556675 |
actttgtttctcaatccaatccaaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttct |
41556774 |
T |
|
| Q |
106 |
taatgtgtcagaacaaatgaaagtagatgataacagcgagttatcagaattatttgataaattacttcttggtactaaagtcacaaaagggccgcatcaa |
205 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41556775 |
taatgtgtcagaacaagtgaaagtagatgataacagcgagttatcagaattatttgataaattacttcttggtactaaagtcacaaaagggccgcatcaa |
41556874 |
T |
|
| Q |
206 |
aacacaagctttcagcagaatgaagaattatcaaacagattctatggttctaggagaaagagaagttatgaggaagttgtggatttgaggacactattga |
305 |
Q |
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| T |
41556875 |
aacacaagcttccagcagaatgaagaattatcaaacagattcggtggttttaggagaaagagaagttatgaggaagttgtggatttgaggacactattga |
41556974 |
T |
|
| Q |
306 |
tgctatgtgcacaatccatttcttgtaatgatatttcaaatgcaaaccaattattaaaccagattaagaaacattcttctccaaccggtgatggaactca |
405 |
Q |
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| T |
41556975 |
tgctatgtgcacaatccatttcttgtaatgatatttcaaatgcaaaccaattattaaaccagattaagaaacattcttctccaaccggtgatggaactca |
41557074 |
T |
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| Q |
406 |
aaggttggcacatttct |
422 |
Q |
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| T |
41557075 |
aagattggcatatttct |
41557091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 6 - 422
Target Start/End: Original strand, 41589320 - 41589751
Alignment:
| Q |
6 |
actttgtttctcaatccaatccaaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttct |
105 |
Q |
| |
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|||||||||||||||| ||| ||||| |||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
41589320 |
actttgtttctcaatctaattcaaccattttcccttctttcaataatgctctttctcatgaggtacttcagacagaaaactttgaagaagagcattttct |
41589419 |
T |
|
| Q |
106 |
taatgtgtca------------gaacaaatgaaagtagatgataacagcgagttatcagaattatttgataaattact---tcttggtactaaagtcaca |
190 |
Q |
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| T |
41589420 |
caatgtgtcacaaaatggatcagaacaagtgtatgtagatgatagcggtgagttatcagaattatttgataaagtactagttcttggtactaaattcaca |
41589519 |
T |
|
| Q |
191 |
aaagggccgcatcaaaacacaagctttcagcagaatgaagaattatcaaacagattctatggttctaggagaaagagaagttatgaggaagttgtggatt |
290 |
Q |
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| T |
41589520 |
aaagggccacttcaaaacacaagcttccagcagaatgaagaattatcaaacagattctatggttctaggagacaaagaagttatgaggaagttgtggatt |
41589619 |
T |
|
| Q |
291 |
tgaggacactattgatgctatgtgcacaatccatttcttgtaatgatatttcaaatgcaaaccaattattaaaccagattaagaaacattcttctccaac |
390 |
Q |
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| T |
41589620 |
tgaggacactattgatgctatgtgcacaatccatttcttgtaatgatatttcaaatgctaaccaattattaaaccagattaagaaacattcttctccaac |
41589719 |
T |
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| Q |
391 |
cggtgatggaactcaaaggttggcacatttct |
422 |
Q |
| |
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| T |
41589720 |
aggtgatggtactcaaagattggcacatttct |
41589751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 422
Target Start/End: Original strand, 41582791 - 41583222
Alignment:
| Q |
6 |
actttgtttctcaatccaatccaaccctttttccttctttcaacaatgctctttctcatgaggtatttaagacagaaaactttgaagaagagcattttct |
105 |
Q |
| |
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|||||||||||||||| ||| |||||||||| ||||| ||||| ||||||||||||||||| | | || ||||||| ||||||||||||||||||||||| |
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| T |
41582791 |
actttgtttctcaatctaattcaacccttttcccttccttcaataatgctctttctcatgacgcaattcagacagagaactttgaagaagagcattttct |
41582890 |
T |
|
| Q |
106 |
taatgtgtca------------gaacaaatgaaagtagatgataacagcgagttatcagaattatttgataaattact---tcttggtactaaagtcaca |
190 |
Q |
| |
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||||||||| |||||| || | |||| ||||| ||| |||||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
41582891 |
caatgtgtcacaaaatggatcagaacaattgcatgtaggtgataccagtgagttatcagaattatttgataaagtactagttcttggtactaaattcaca |
41582990 |
T |
|
| Q |
191 |
aaagggccgcatcaaaacacaagctttcagcagaatgaagaattatcaaacagattctatggttctaggagaaagagaagttatgaggaagttgtggatt |
290 |
Q |
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| T |
41582991 |
aaagggctacttcgaaacacaagctttcagcagaatgaagaattatcaaacagattctatggttctaggagacaaagaagttatgaggaagttgtggatt |
41583090 |
T |
|
| Q |
291 |
tgaggacactattgatgctatgtgcacaatccatttcttgtaatgatatttcaaatgcaaaccaattattaaaccagattaagaaacattcttctccaac |
390 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41583091 |
tgaggacactattgatgctgtgagcacaatccatttcttgtaatgatatttcaaatgcaaatcaattattaaaccagattaagaaacattcttctccaac |
41583190 |
T |
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| Q |
391 |
cggtgatggaactcaaaggttggcacatttct |
422 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |
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| T |
41583191 |
cggtgatggaactcaaagattggcacatttct |
41583222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 58 - 422
Target Start/End: Original strand, 41570424 - 41570803
Alignment:
| Q |
58 |
ttctcatgaggtatttaagacagaaaactttgaagaagagcattttcttaatgtgtca------------gaacaaatgaaagtagatgataacagcgag |
145 |
Q |
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| T |
41570424 |
ttctcatgaggtgattaagacagaaaactttgaagaagagcattttctcaatgtgtcacaaaatgagtcagaacaagtatatgtagatgataacagcgag |
41570523 |
T |
|
| Q |
146 |
ttatcagaattatttgataaattactt---cttggtactaaagtcacaaaagggccgcatcaaaacacaagctttcagcagaatgaagaattatcaaaca |
242 |
Q |
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||| |||||||||||||||||||||| |||||||||||||| | ||||||||| | ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
41570524 |
ttaccagaattatttgataaattactagtccttggtactaaagtaaaaaaagggccacttcaaaacacaagctttcagcagaattatgaattatcaaaca |
41570623 |
T |
|
| Q |
243 |
gattctatggttctaggagaaagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgtaatgatatttc |
342 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41570624 |
gattctatggttataggagacagagaagttatgaggaagttgtggatttgaggacactattgatgctatgtgcacaatccatttcttgtaatgatatttc |
41570723 |
T |
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| Q |
343 |
aaatgcaaaccaattattaaaccagattaagaaacattcttctccaaccggtgatggaactcaaaggttggcacatttct |
422 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
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| T |
41570724 |
aaatgctaaccaattattaaaccagattaagaaacattcttctccaacaggtgatggtactcaaagattggcacatttct |
41570803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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