View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9834_low_2 (Length: 335)
Name: NF9834_low_2
Description: NF9834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9834_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 41985868 - 41986198
Alignment:
| Q |
1 |
ataactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41985868 |
ataactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgt |
41985967 |
T |
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| Q |
101 |
tgacatgcaagggatcggcgtccaacactctttgcggcaatggaacagtagcggatggcaggcacagttcaatgtgacaagagcgagaggatttttccca |
200 |
Q |
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| T |
41985968 |
tgacacgcaagggatcggcgtccaacactctttgcggcaatggaacagtagcggatggcaggcacagttcaatgtgacaagagcgagaggatttttccca |
41986067 |
T |
|
| Q |
201 |
tggcacgtgacagcaacaacctttattcccattgccttattttccatttccnnnnnnnnnattgcatgtttaaaagcttcatcttgtaagttcaagtaat |
300 |
Q |
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| T |
41986068 |
tggtacgtgacagcaacaacctttattcccattgccttattttccatttcctttttttctattgcatgtttaaaagcttcatcttgtaagttcaagtaat |
41986167 |
T |
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| Q |
301 |
ggaattcaaatctctcctggagcagttccat |
331 |
Q |
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| T |
41986168 |
ggaattcaaatctctcctggagcagttccat |
41986198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 13170563 - 13170240
Alignment:
| Q |
1 |
ataactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgt |
100 |
Q |
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| T |
13170563 |
ataactcaacactatcgcccggtccaaaagcaactgtccgaccaattttattgactgcacaaaaccgatctttaaacatgcagatatctaaaaagttcgt |
13170464 |
T |
|
| Q |
101 |
tgacatgcaagggatcggcgtccaacactctttgcggcaatggaacagtagcggatgg------caggcacagttcaatgtgacaagagcgagaggattt |
194 |
Q |
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| T |
13170463 |
ttacatgcaggggataggcgtccaacgctcttcgcggcaatggaacagtagtggatggccctgaccgtgaccattcaatgtgctaagagcgagaggattt |
13170364 |
T |
|
| Q |
195 |
ttcccatggcacgtgacagcaacaacctttattcccattgccttattttccatttccnnnnnnnnnattgcatgtttaaaagcttcatcttgtaagttca |
294 |
Q |
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|||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||| ||||||||| |
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| T |
13170363 |
ttcccatgacacatgacagcaacaacctttattccccttgccttattttccattttctgtttttctgctgcatgttcaaaagcttcatctagtaagttca |
13170264 |
T |
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| Q |
295 |
agtaatggaattcaaatctctcct |
318 |
Q |
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| T |
13170263 |
agtaacggaatttaaatctatcct |
13170240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 18991439 - 18991562
Alignment:
| Q |
2 |
taactcgacactatagtccggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgtt |
101 |
Q |
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|||||| |||||||||||| |||||| ||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18991439 |
taactcaacactatagtccaatccaaacgcaactgtcctaccaattttattaaccgcataaaaccgctctttaaacacgcagatgtctagaaagtacgtt |
18991538 |
T |
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| Q |
102 |
gacatgcaagggatcggcgtccaa |
125 |
Q |
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| T |
18991539 |
gacatgcatgggatcaacgtccaa |
18991562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 2926385 - 2926346
Alignment:
| Q |
185 |
gagaggatttttcccatggcacgtgacagcaacaaccttt |
224 |
Q |
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| T |
2926385 |
gagagggtttttcccatggcacgtgacaacaacaaccttt |
2926346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7041904 - 7041946
Alignment:
| Q |
184 |
cgagaggatttttcccatggcacgtgacagcaacaacctttat |
226 |
Q |
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| T |
7041904 |
cgagaggtttttttccatggcacgtgacagcaacgacctttat |
7041946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 9171234 - 9171274
Alignment:
| Q |
184 |
cgagaggatttttcccatggcacgtgacagcaacaaccttt |
224 |
Q |
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||||||| ||||| |||||||||||||||||||| |||||| |
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| T |
9171234 |
cgagaggtttttttccatggcacgtgacagcaacgaccttt |
9171274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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