View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9834_low_4 (Length: 242)
Name: NF9834_low_4
Description: NF9834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9834_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 41135526 - 41135301
Alignment:
| Q |
16 |
catggccaccttcaatgtccatctttctcaatgtttttctcatgactacgctcaaaacactctctttccaacgctttgctatatggtcatgttttattac |
115 |
Q |
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| T |
41135526 |
catggccaccttcaatgtccatctttctcaatgtttttctcatgactacgctcaaaacactctctttccaacgctttgctatatggtcatgttttattac |
41135427 |
T |
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| Q |
116 |
catgttttatgtgctttatggtgttcactctacgtatcaagctgaggagattgagaatttgggtggtgttaatcaagtggtcccaaatttgagtgtaacc |
215 |
Q |
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| T |
41135426 |
catgttttatgtgctttatggtgttcactctacgtatcaagctgaggagattgagaatttgggtggtgttaatcaagtggtcccaaatttgagtgtaacc |
41135327 |
T |
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| Q |
216 |
aacttacaaactaagggtggaaatcca |
242 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
41135326 |
aacttacaaactaa-ggtggaaatcca |
41135301 |
T |
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