View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9834_low_6 (Length: 235)
Name: NF9834_low_6
Description: NF9834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9834_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 11658256 - 11658454
Alignment:
| Q |
17 |
aggatgaaaatgatgaatcttcaaagaaaaacagagaaaagtttgaagcgtaaggaacatgcatccatggcagaatgggaagcgtaactgaatcgtcgta |
116 |
Q |
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| T |
11658256 |
aggatgaaaatgatgaatcttcaaagaaaaacagagaaaagtttgaagcgtaaggaacatgcatccatggcagaattc--agcgtaactgaatcgt---a |
11658350 |
T |
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| Q |
117 |
acaaccttcttctcatataaggatctgataccatattaagaaagtgaattgagaatcctaaaagacaaaatgaagaacattgtgaaagaaattctgttat |
216 |
Q |
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| T |
11658351 |
acaaccttcttctcatataaggatctgataccatattaagaaagtgaattgagaatcctaaaagagaaaatgaagaacattgtgaaagaaattctgttat |
11658450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 14931914 - 14931985
Alignment:
| Q |
149 |
atattaagaaagtgaattgagaatcctaaaagacaaaatgaagaacattgtgaaagaaattctgttattcat |
220 |
Q |
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| T |
14931914 |
atattaagaaagtgaattgagaattctagaagagaaaattgagagcatagtgaaagaaattctgttattcat |
14931985 |
T |
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